XLOC_010589 (m6pr)


Basic Information

Item Value
gene id XLOC_010589
gene name m6pr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17578607 ~ 17586883 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020751
GTGTGTTCTCTAAAAGTCATGTTGCTGTCTGTGAGAATAATCACTCCACTTTTCGTACTATTTGCTGGAGTGCAAGCTAGGTTCAACACGAGCAACTGCAAGCTTGTGTCAGACAGTGAATCTCAGAGAAAAGCACTCCGTTTACTGGAGCCTCTCACCAATCAAAACTTTACCACAGAGGGACAGGAGAAAGaaaaatattcatacatttttcagGTGTGTGGTGATGCTGGCGGAGTAAAGAATGCAGGTCTTATTCAGCAAGAAAAAGGTGGAAAGACGATTCGAATTGGGGACTACAGTAAAACAGTTGCCACTGCAGGAAGTGACTGGGTTCTGCTCATCTATGAGGGTGGGGAAAAATATGACAGCCATTGTTCCAGTGAGGAGAGAAAAGCCATGATTATGATTTCATGCAGCTCAAGTTCTAAGaGTGCATTTTCAGTGGTTATGGAGGAAAATCAGAagcaaaaaaattgttattaCCTGTTTGAGCTGGACACCACTGCAGTCTGTCCTGCAGTCTCATCCAAACTCAGTGCTGGCTCCATAGTCCTAATAGTTGTAATCTCCTCCCTGACTGTGTATATTATTGGTGGATTCCTCTATCAGCGACTGGTAGTTGGAGCCAAAGGAGTTGAACAATTCCCTAACTTTGCCTTTTGGTCAGAGATTGGCAATTTATCTGCTgatgGGTGTGATTTTGTTTGCCGTTCTCGTGGTAACAGAGAAGAACCACCCACGTATAGAGGAGTGGGTACTGAACCACTTGGGGAAGAGCCAGAGGAAAGAGATGACCATTTACTTCCCATGTGACCACATCATGATAATCAACGAGAAGAGGCTGAACAGTTATTACTATTTTGGAACCAAATAAGAAATATTCAAATGTTGAGCAGGCGTGTTCCTTGTTTATAACAAGTTTTTAGCTTCCCAGTGGCACTTATTCTTTATTTATCCATGTCGATTTGGGCTTGGTTAAATGTATAGGTTTGCTAAATTACTTTCTAAAATCCAAAGAGCCAcaattatttttgataatttgattatttatgaCAAGTTGCCATCATCATAAAAGTGCAACACCGCCCATGTTTTCCTGTCACTCATATAGAAAGTAAACAATCTCAATGCTGCTTGACTGTGACAGATGTAGTTTGGTATGAAGTGGTTAATTTCATTAGAATGGTTGAGTTTTATTTGTAGTATGACCCATGTTTGATAAAATGGGAATGATGCTTTTAAGCTTATGGTCTACTAAtcaaattcattattattttttttctataattttccagaaatcaattaaaaataacttaaatgctTACATTAACATTCCAAATATTTGTTGTGGAATATTGTGTTATGAGGACATGGTGAGGCCTACCTCTTCAGCCTGTTACACTCTTTataaaatgtttctgaatgaTGTTATCAATAATAAATTTCTATCATAAATGCTGTTAATAAGTATAATCAAAAGAAAATTGAGCTTCATAACAATTTTGCTACATAACTTATAACAGATATACAGTCTTTGAAATAACAGGAATGAAATGTAAAAggaattgtttttgtttagttagtTTTCTGAAGTTTGCCTTGTTGATATTGACAAATGGTTGTGGGATCTGTTTTTATGGTTTTAATTGTTGTGTGTTCCAATGCACTGAAGCTGTCAACTTGATTTTAGGATGATTTGTACATTGTACTATTctcgaaaaaaaaacaacttaaatatGTCATTTATGTGGAACTGACACCATGAATGATATTCTTAAatttgaggtaaacacaaaaagcCTTACAACATcagaaaaagttaataaatataaGGCTAACCCATACTTGGTGTTTCATAGAAGTTTTAGTTTGAGTACTGTATACAAGTGAGTTAGAGGCTCCTTAAAAGCACTTCCAAAGTATCATACTTTAATTAAAGAGACCATATTATTAGCAGAAAGGTATGCATTTGGCTTTTAATGAGAAACAGGGCTGGGAAAATAGGTGAGTTTTTCTGTTCTTTgccgttttcatttttttttttaatttagtgtgAAATATATTTTGTGTGCTTTGTTATTAAAAGGAagtattataaataaactgtttgatTACCGATTTGTGTATGTAGTTTGAAGTTTTAACAGTCGAGAGTCCTATAATATTGctaatttgcattattatttgtaattgtaattaCTACACATTTTTAAGATGTGATTTATTagtagcaatttaaaaaaaaaattttttgttattGTCAAGAATGTTTGAATACAAACAGTAACATTGGTCACAGAACATAgacttattaaaaaaattctaaaactaatgtcaaaataaataaatacaaaagctATGAAACTGTATGGAAGCCTAAAttcattaaaacatatgctattaTTTTACAGACTGCAGCAAGTTTAGTTTAAGGTCAGggataaaataaattctaaaaaaataataagtcttATTCAGAGATTAGTTATGACTTTAAAAGGGCCCTGGAAATGGATTTTTGATATTAATGAATGCTATGCAGCTTTCAATttcaaatcacattttaaaataaatatggtcTTTATTATCATAGTCATATGCTGTTTAATTAAATTCACatatctatattttatttatttattgattataatttttttatttatatatttccccacagtccaaagacatgcgctataggtaaattgaataagctaagttgATCATAGtctgtgaatgagtatgtataggtgtttcccagtgttgggttgtatgaaagggcatccgctgtgttaaacaaatgcttgataagttggcggttcattccgctgtagtgacccctaaTTAACAAAGGgcctaagctgaaaaaaatttatgaataaattagtCGTAGTGTacatgtgaatgcaagagtgtatgggtgtttcccaataatggtttgcagccggaagggcatccactgcataaaatatgctgaataagttgccggttcattccactgtggcgacccatgtctaataaagggactaagccgaaaagtaaatgaacgaatgaataaatgatgatcctcaacagtttttatgttttgtgataTCTGCCCGTGAGTGTTTGTTCTGAACAGTTAAACTGGCAGCTATTCTGGAAAATCCTTCTTTAGGATCTGTACTTCAGTAGCTTTAGTGGAATAGATTTTATTAGTAACATTTTCAATTTGATCATGCACGACTAGAACATTCTTCTCTCATCAAAACAAATCccttgtgatttttaaaaattaataatttctcGTTCTGCTAATTCGAATCCCCTTCACATGGACCTCAAATTTGCtcaaatgtaataatgtaaatacTTTGCTTTCAGatgcaaatattaaaagtaatgttttattattgggttcaaaataaaaaacaactgcTCAAC
>TCONS_00020752
ATGTTAACGTGCAGCAAACCAACTTCCGCCTCATGCACAGTCACATGTGCATGTTTAGTTTCACTTCCGCGTTTAAGAAGAAACCATTAAATTCTGTTATCGTGCAATTGTTTTAGAGTGAATATTCAtaagtttgtttatttggtttgtaAAAGTTGACAGCAGAAGATATTTTGACGTAATGCCGATTAGTCTAGTTTAAAGACGGTAAGTTAGTGCGATAGTTTTGAAATAGGAAGATCTCCAGGCTGGGAAGACAAatctaacgttaacgttatacAAGTTAAGACCTTCACTTTCCTTCATTCAAAACGGTGTGTTCTCTAAAAGTCATGTTGCTGTCTGTGAGAATAATCACTCCACTTTTCGTACTATTTGCTGGAGTGCAAGCTAGGTTCAACACGAGCAACTGCAAGCTTGTGTCAGACAGTGAATCTCAGAGAAAAGCACTCCGTTTACTGGAGCCTCTCACCAATCAAAACTTTACCACAGAGGGACAGGAGAAAGaaaaatattcatacatttttcagGTGTGTGGTGATGCTGGCGGAGTAAAGAATGCAGGTCTTATTCAGCAAGAAAAAGGTGGAAAGACGATTCGAATTGGGGACTACAGTAAAACAGTTGCCACTGCAGGAAGTGACTGGGTTCTGCTCATCTATGAGGGTGGGGAAAAATATGACAGCCATTGTTCCAGTGAGGAGAGAAAAGCCATGATTATGATTTCATGCAGCTCAAGTTCTAAGaGTGCATTTTCAGTGGTTATGGAGGAAAATCAGAagcaaaaaaattgttattaCCTGTTTGAGCTGGACACCACTGCAGTCTGTCCTGCAGTCTCATCCAAACTCAGTGCTGGCTCCATAGTCCTAATAGTTGTAATCTCCTCCCTGACTGTGTATATTATTGGTGGATTCCTCTATCAGCGACTGGTAGTTGGAGCCAAAGGAGTTGAACAATTCCCTAACTTTGCCTTTTGGTCAGAGATTGGCAATTTATCTGCTgatgGGTGTGATTTTGTTTGCCGTTCTCGTGGTAACAGAGAAGAACCACCCACGTATAGAGGAGTGGGTACTGAACCACTTGGGGAAGAGCCAGAGGAAAGAGATGACCATTTACTTCCCATGTGACCACATCATGATAATCAACGAGAAGAGGCTGAACAGTTATTACTATTTTGGAACCAAATAAGAAATATTCAAATGTTGAGCAGGCGTGTTCCTTGTTTATAACAAGTTTTTAGCTTCCCAGTGGCACTTATTCTTTATTTATCCATGTCGATTTGGGCTTGGTTAAATGTATAGGTTTGCTAAATTACTTTCTAAAATCCAAAGAGCCAcaattatttttgataatttgattatttatgaCAAGTTGCCATCATCATAAAAGTGCAACACCGCCCATGTTTTCCTGTCACTCATATAGAAAGTAAACAATCTCAATGCTGCTTGACTGTGACAGATGTAGTTTGGTATGAAGTGGTTAATTTCATTAGAATGGTTGAGTTTTATTTGTAGTATGACCCATGTTTGATAAAATGGGAATGATGCTTTTAAGCTTATGGTCTACTAAtcaaattcattattattttttttctataattttccagaaatcaattaaaaataacttaaatgctTACATTAACATTCCAAATATTTGTTGTGGAATATTGTGTTATGAGGACATGGTGAGGCCTACCTCTTCAGCCTGTTACACTCTTTataaaatgtttctgaatgaTGTTATCAATAATAAATTTCTATCATAAATGCTGTTAATAAGTATAATCAAAAGAAAATTGAGCTTCATAACAATTTTGCTACATAACTTATAACAGATATACAGTCTTTGAAATAACAGGAATGAAATGTAAAAggaattgtttttgtttagttagtTTTCTGAAGTTTGCCTTGTTGATATTGACAAATGGTTGTGGGATCTGTTTTTATGGTTTTAATTGTTGTGTGTTCCAATGCACTGAAGCTGTCAACTTGATTTTAGGATGATTTGTACATTGTACTATTctcgaaaaaaaaacaacttaaatatGTCATTTATGTGGAACTGACACCATGAATGATATTCTTAAatttgaggtaaacacaaaaagcCTTACAACATcagaaaaagttaataaatataaGGCTAACCCATACTTGGTGTTTCATAGAAGTTTTAGTTTGAGTACTGTATACAAGTGAGTTAGAGGCTCCTTAAAAGCACTTCCAAAGTATCATACTTTAATTAAAGAGACCATATTATTAGCAGAAAGGTATGCATTTGGCTTTTAATGAGAAACAGGGCTGGGAAAATAGGTGAGTTTTTCTGTTCTTTgccgttttcatttttttttttaatttagtgtgAAATATATTTTGTGTGCTTTGTTATTAAAAGGAagtattataaataaactgtttgat
>TCONS_00020753
GTGTTCTCTAAAAGTCATGTTGCTGTCTGTGAGAATAATCACTCCACTTTTCGTACTATTTGCTGGAGTGCAAGCTAGGTTCAACACGAGCAACTGCAAGCTTGTGTCAGACAGTGAATCTCAGAGAAAAGCACTCCGTTTACTGGAGCCTCTCACCAATCAAAACTTTACCACAGAGGGACAGGAGAAAGaaaaatattcatacatttttcagGTGTGTGGTGATGCTGGCGGAGTAAAGAATGCAGGTCTTATTCAGCAAGAAAAAGGTGGAAAGACGATTCGAATTGGGGACTACAGTAAAACAGTTGCCACTGCAGGAAGTGACTGGGTTCTGCTCATCTATGAGGGTGGGGAAAAATATGACAGCCATTGTTCCAGTGAGGAGAGAAAAGCCATGATTATGATTTCATGCAGCTCAAGTTCTAAGgatgGGTGTGATTTTGTTTGCCGTTCTCGTGGTAACAGAGAAGAACCACCCACGTATAGAGGAGTGGGTACTGAACCACTTGGGGAAGAGCCAGAGGAAAGAGATGACCATTTACTTCCCATGTGACCACATCATGATAATCAACGAGAAGAGGCTGAACAGTTATTACTATTTTGGAACCAAATAAGAAATATTCAAATGTTGAGCAGGCGTGTTCCTTGTTTATAACAAGTTTTTAGCTTCCCAGTGGCACTTATTCTTTATTTATCCATGTCGATTTGGGCTTGGTTAAATGTATAGGTTTGCTAAATTACTTTCTAAAATCCAAAGAGCCAcaattatttttgataatttgattatttatgaCAAGTTGCCATCATCATAAAAGTGCAACACCGCCCATGTTTTCCTGTCACTCATATAGAAAGTAAACAATCTCAATGCTGCTTGACTGTGACAGATGTAGTT

Function

symbol description
m6pr Enables mannose binding activity and protein domain specific binding activity. Acts upstream of or within protein targeting to lysosome. Located in trans-Golgi network. Is expressed in nervous system; presumptive neural retina; and somite. Orthologous to human M6PR (mannose-6-phosphate receptor, cation dependent).

GO:

id name namespace
GO:0006622 protein targeting to lysosome biological_process
GO:0005768 endosome cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005537 mannose binding molecular_function
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
ko04145 Phagosome
ko04142 Lysosome
ko05132 Salmonella infection
ko04147 Exosome
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-040426-2285 Enables mannose binding activity and protein domain specific binding activity. Acts upstream of or within protein targeting to lysosome. Located in trans-Golgi network. Is expressed in nervous system; presumptive neural retina; and somite. Orthologous to human M6PR (mannose-6-phosphate receptor, cation dependent).

Ensembl:

ensembl_id ENSDARG00000018432

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020751 False 3423 mRNA 0.34 6 17578607 17586070
TCONS_00020752 False 2429 mRNA 0.36 7 17579915 17586883
TCONS_00020753 True 898 mRNA 0.41 4 17580872 17586068

Neighbor

gene id symbol gene type direction distance location
XLOC_010588 casp2 coding downstream 104 17548695 ~ 17578503 (-)
XLOC_010587 clcn1b coding downstream 36717 17477152 ~ 17541890 (-)
XLOC_010586 zyx coding downstream 230880 17302452 ~ 17347727 (-)
XLOC_010585 kel coding downstream 278577 17263027 ~ 17300030 (-)
XLOC_010584 emg1 coding downstream 320496 17254489 ~ 17258111 (-)
XLOC_010590 ccdc106a coding upstream 53013 17639896 ~ 17660594 (-)
XLOC_010591 si:dkey-17m8.1 coding upstream 84418 17671301 ~ 17699111 (-)
XLOC_010592 NA coding upstream 117947 17704830 ~ 17706764 (-)
XLOC_010593 zgc:174935 coding upstream 124332 17711215 ~ 17713859 (-)
XLOC_010594 NA coding upstream 236564 17823447 ~ 17824848 (-)
XLOC_010626 CR392024.2 misc upstream 3308229 20895112 ~ 20895175 (-)
XLOC_010583 CR936322.2 non-coding downstream 331244 17247222 ~ 17247363 (-)
XLOC_010582 CR936322.1 non-coding downstream 333560 17244908 ~ 17245047 (-)
XLOC_010576 CU861451.1 non-coding downstream 458421 17120064 ~ 17120186 (-)
XLOC_010568 NA non-coding downstream 974527 16593349 ~ 16604080 (-)
XLOC_010567 CR848667.3 non-coding downstream 1005077 16573414 ~ 16573530 (-)
XLOC_010595 NA non-coding upstream 550759 18137642 ~ 18140068 (-)
XLOC_010596 NA non-coding upstream 558534 18145417 ~ 18150006 (-)
XLOC_010597 AL929304.1 non-coding upstream 782031 18368914 ~ 18372540 (-)

Expression


Co-expression Network