G280705


Basic Information

Item Value
gene id G280705
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000071
NCBI id null
chromosome length 5214881
location 1496363 ~ 1496634 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU318261
GTCTGCTTGAGAGATTTGACTCAGTTGAGTTTTTTACACACACACACACACACACACACACACACACACACACACACACACAGAGAGAGGTTTGTTTTGCAATCAAAATGAGGACATTCCATAGGCGTAATGGTTTTTATACTGTACAAACTGAACATTCTATCCCCTACACTACCCCTAACCCTAAACCTACCCATCACAGAAAACATTCATTTTTAATAAAATTTCATTTAAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU318261 True 236 lncRNA 0.38 2 1496363 1496634

Neighbor

gene id symbol gene type direction distance location
CI01000071_01452292_01490229 AACS coding upstream 5451 1450564 ~ 1490912 (+)
CI01000071_01443137_01445109 BRI3BP coding upstream 51197 1443137 ~ 1445166 (+)
CI01000071_01436960_01442221 POLI coding upstream 53843 1436960 ~ 1442520 (+)
CI01000071_01416847_01427453 ANKLE2 coding upstream 67565 1416414 ~ 1428798 (+)
CI01000071_01392755_01411463 GOLGA3 coding upstream 83682 1392755 ~ 1412681 (+)
CI01000071_01514470_01525572 NA coding downstream 17681 1514315 ~ 1528807 (+)
CI01000071_01580310_01581199 NA coding downstream 83676 1580310 ~ 1581205 (+)
CI01000071_01677282_01720849 NA coding downstream 180648 1677282 ~ 1720849 (+)
CI01000071_01909999_01929819 NA coding downstream 412444 1909078 ~ 1930261 (+)
CI01000071_01966426_01969786 NA coding downstream 469459 1966093 ~ 1969786 (+)
CI01000071_01380924_01388813 RANBP1 non-coding upstream 115460 1380558 ~ 1388948 (+)
G280676 NA non-coding upstream 125384 1357275 ~ 1370979 (+)
G280662 NA non-coding upstream 190221 1305898 ~ 1306142 (+)
G280646 NA non-coding upstream 213940 1280535 ~ 1282423 (+)
G280628 NA non-coding upstream 252843 1243296 ~ 1243520 (+)
G280740 NA non-coding downstream 234497 1731131 ~ 1731351 (+)
G280745 NA non-coding downstream 244257 1740891 ~ 1742345 (+)
G280772 NA non-coding downstream 287982 1784616 ~ 1784816 (+)
G280781 NA non-coding downstream 311442 1808076 ~ 1808304 (+)
CI01000071_01374449_01376813 NA other upstream 118693 1373996 ~ 1377670 (+)
G280443 NA other upstream 574267 905217 ~ 922096 (+)
CI01000071_00792254_00802384 SLC6A4B, SLC6A4 other upstream 693046 791346 ~ 803317 (+)
CI01000071_02815324_02834097 NA other downstream 1308010 2815127 ~ 2835525 (+)
G282080 NA other downstream 1559450 3056084 ~ 3056531 (+)

Expression


Co-expression Network