XLOC_010591 (si:dkey-17m8.1)


Basic Information

Item Value
gene id XLOC_010591
gene name si:dkey-17m8.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17671301 ~ 17699111 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020755
aATGGACATCAGAACAACTCCAGACATTAACAGTGCTGACTAACTTTGATTTGTCAGTTTATTTTTTGAGAATGAACGTGAGACAAAAATCTGGAAGCATGAAAGATTGGGAATCAACTGGAAATAGATTTCAGCTAATTCACATGGCTTTGTTTTTGAGGTAGCTGTTTACAAGAACAGGAAGAGATGCTTATTAGACACTGTCACTAACACAGTATTGCTATTTTCACACTTTTGGTATacattaaaaccattttaaggttgtGAAAAAAGGAAGTGGTTTGGGTTAAGTAGTCAGAACAACTGCAAAACTGGGGTGTAGATTCAGATCACAGGGATATTAAATACTGTAAGCCAACCAGAGTGTGAACATCTTTGAAAAATGGATTGTGGTGAAAGTTTTTGTGGAAGTGGAGAGCTGGAGCTAGATCCAGATATTGTGAGCGAGGAGGCAGGGAAGCTGTATTCGGAGTTGCAGTCAGTGGTGGAGACTCATGGAGCTGATGTGGTGGAGTCTTTGCTGCCCATCCTTGTCTGGGTTCTGGAAGGGCTGGCGAGCTGCAGGGCTcagctgagagaaagagaggaaacATCGGAGAAAGAGAAAGGGGAAAGGGAAGAACTGTTGGATAGGTATCAGAGTGAGAAAACACTGAGGAGACAAAGCCAGGAGGTGAGAGAACCTGTGTgattaaaatgaaacttttttgtttgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgttgatatGTTTATGAAAATTTTTATAAACATGTTATCAGCGCTATCTGGAGCTGGACGACCAGTTTGAGCAAGAAAGGAGAGCAATGCGTTCAAGAGAAaatgagagagaaaagagagaaagagaactgGAGAAAAAAGCCAGAGAACAAGCCGATCAGTtGATGGCTTTGGAAGAACAAAAATCAAATCTGAGCCGAGAACTaaactcactcaaacacacacacaacaagTTAGTACTGACACATCGAGATCTGCTTGAGAAGAAAAAGGAGTGGGAGAGTGAAGCCTCTGCTTTCAGGAATCATGTGCACAGCAAATACTCAGAAGCAGTTTCTAACCAAGGTCAAACTGACACCTCCAGCTCTGAAGAGCATTGTCCTGAAGCTGGCAGTGTCAATGACTCCACATCTACTACTATTACCAATGACAACAAAGTGACTGATGCTGAGGTTAATCATAATAATGAGTCTTTTATCAGTGAAATCATAAGCTCCACCCCTGAGTTGGCCCATTtgaagaaatgtgttgaaacaagTACCCCTGTTTGCTTGAAGACGATGACTTCTGAAATAAACTCCAGTTTGTTTGATGAGATTAAACAAGACCCGGAAGATAAAAATGAGGAAGATGGAGATCAGAAGCTAAAAGTTGGGGAAAAAACTAACGTGGAAACCATGGAAAATGACTCTGATTGTTTGGAGTATCAGTTAAGGAATACAGACTCTGTGTTTTCAGAGTTGTCAGAACTCAGCAGGGACTATGTGGAAAATGTTGACAAGGGGGCCAGCGTAAGAGATAGCTCAGACCAGTTTGAGCAGATTCTTTCTCAGTATGAGGAACTAAAATGCAGCCATGAAATGGTGGATACTGCTCGCAAGGCCCTTATATCCCGTGTTGAGGAGCTGACCAATGAGAGATCAGCCCTGAATTTGGAACTTGTTTCTTGCCGTGAAACAATCACCAGATTTGAAGGAAAAATTAAGGAAATGGAAGAGGAAAGCAAAAGGTTACAAAAAGAACTGGAGATGTTTCAATCAGAGAACCCCGATGCGTCTACACCGACCTCCCTCCGCCGATTCTCTCGTTCTGAAATGGCTCGAGTCGTTATGGAGAAAAACCAATATAAAGAGAGACTGTTTGAATTGCAGGAAGCTGTGCGGCGCTCCCAAACACTAAAAGTTACAAAAGAAGAGCATCCCCCTGTGGAAGGGAAGGGTAGTGTCTGGAGCAGGTTTAATCGTTTTTTAGGTTTGACGAAGGGTCAGTTAGGTCCAGCCACAGCTTTAGCAGTAACCATGTCTTCCACACCAGCCCCTGCACAAGCTCCTGCAGGGTCTCCAAAGCATCTCTCAACAAAACCACCACAAACAGAGAATTCTTCATCACCCAGATTAAGGAAAAGAGAGTTGTACAGGGAAATTCGTTCTCATGTGTGGGGTACACTGGGTAAAAAACAGCTTCATGGCTGGAGCATGCCTCTTGCTATTACCAACATAAAGAATTTTGAGCCACTTCCTGAGCCCAAAGACGTGCCCATTCTCATACAACTAAGACTGCTGGACCAGAGAGATGCTACAGCCAAGCTCACATGTGCTGTTGCAGTTCCTCCAGAGATATCAGGAGAGCAGACGTGTTCTGTGTGGGCTGTCACTGGACCTGCCTCCAGCAGCGATGTCACAGTGATTGACCCGGCCCGCTCCAATACTATACTGGATCAGTTCAGTCTTCCACCTACGTCCCCAGCATTATGCATCTGTGCTGTGCCCCCTACTGGAAATACTCTGGGAACTGTGTGGATCGGAACACAAGATGGAGGTGTGCTGATCCATTCGTCCTCCAGCTCCAGGCGCCACTGTTTGCAATCAGTCAACCTTTCCGAGGGAGTTCATTCTCTGACATATTCTCAGGACGAGGTAGTTGCTGGCTTAGCTGATGGGACGCTTGTATTCTTCTCTCACAATTCAGGCATGTGGGATCTCCAGTCTCATGAGGTGCTATCACTCGACACACCTCCTTTGCAGCCCATTCGCTGTTGCTTGGCAAAAGAAGGCTGTCTTTGGGTGGGATACTGGAATAAAGTTTACATGATCAGTGCAAAACAACGAAAAATACAGAAGTCATTCTCAGTGTCTGAGCGAAATGAGCAGCAGGTGCGTTTTCTGTGTGCAGCGGGAAGTGGAGTTTGGGCATCCTGCCGTTTGGATTCTATTCTGAGGCTTTTTGACTGGACAACTGGCCGCCCACTACAGGAAGTAGATTTATCATCCATGGTGACTAAAGCTTTAGGATCTGCATTCCTGTCTCTCTCCCCGCTTCAGATCACAGCCATGTCTGTGGTCAGTGGCAGGCTGTGGGTGGGCACAGGAAGTGGTGCAGTTTTCTCAATTCCCCTGTCCCTTACTTCAGAGTCCTGTTCTATACCATACTGCTCTCTTGCTTCTGCACAGCTCTGTTACCATGGCCATCGACAAGCTGTCAAATTCATTATTTCTGCTCCAGGCTGCTATAGTGCTTCCAATTCAGCAGATGGTGCTGCCACTTCCTCTCAGCTTATTCTCAGTGGAGGGGAAGGATATATCAACTTCCGAATTGGAGATGATGGAAGTGATGGGGCCAGTGAGTATGTCCTACAGAGATCAGAAAGAAGTCACATGATTATTTGGCAGAGCCCCATCCTTTGCGTTCCAAGCCCTGCCCTTTAA
>TCONS_00021793
AGCTCACATGTGCTGTTGCAGTTCCTCCAGAGATATCAGGAGAGCAGACGTGTTCTGTGTGGGCTGTCACTGGACCTGCCTCCAGCAGCGATGTCACAGTGATTGACCCGGCCCGCTCCAATACTATACTGGATCAGTTCAGTCTTCCACCTACGTCCCCAGCATTATGCATCTGTGCTGTGCCCCCTACTGACGCTGGGACCCAGATTTCTAAAGGAAATGCAACATTTACTTTCATCACAGAACATAACTTTGGAGCACTCAGCAGCAGTCCAGTCTTTAGCCCAGACAAGATGGTTCTGACACTGTTGTTCAGGAGTGGCTTGACACAAGTAATGTCTATGAACAGCCAGACCTTTTGTGTCTTGCCTTCTTGTGCAAGATGTTAATGGTCACCTTTTGaacaactgtttaactgttttgaaCAACCATCTTCCCtatgaagctgcggtcacactgggc

Function

symbol description
si:dkey-17m8.1 Predicted to enable JUN kinase binding activity; kinesin binding activity; and signaling adaptor activity. Predicted to be involved in vesicle-mediated transport. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0007257 activation of JUN kinase activity biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0005078 MAP-kinase scaffold activity molecular_function
GO:0008432 JUN kinase binding molecular_function
GO:0030159 signaling receptor complex adaptor activity molecular_function
GO:0019894 kinesin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-225 Predicted to enable JUN kinase binding activity; kinesin binding activity; and signaling adaptor activity. Predicted to be involved in vesicle-mediated transport. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000079530

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020755 False 3477 mRNA 0.44 26 17671301 17699111
TCONS_00021793 True 462 lncRNA 0.48 3 17679103 17681952

Neighbor

gene id symbol gene type direction distance location
XLOC_010590 ccdc106a coding downstream 10707 17639896 ~ 17660594 (-)
XLOC_010589 m6pr coding downstream 84418 17578607 ~ 17586883 (-)
XLOC_010588 casp2 coding downstream 92798 17548695 ~ 17578503 (-)
XLOC_010587 clcn1b coding downstream 129411 17477152 ~ 17541890 (-)
XLOC_010586 zyx coding downstream 323574 17302452 ~ 17347727 (-)
XLOC_010592 NA coding upstream 5719 17704830 ~ 17706764 (-)
XLOC_010593 zgc:174935 coding upstream 12104 17711215 ~ 17713859 (-)
XLOC_010594 NA coding upstream 124336 17823447 ~ 17824848 (-)
XLOC_010595 NA coding upstream 438531 18137642 ~ 18140068 (-)
XLOC_010596 NA coding upstream 446306 18145417 ~ 18150006 (-)
XLOC_010626 CR392024.2 misc upstream 3196001 20895112 ~ 20895175 (-)
XLOC_010583 CR936322.2 non-coding downstream 423938 17247222 ~ 17247363 (-)
XLOC_010582 CR936322.1 non-coding downstream 426254 17244908 ~ 17245047 (-)
XLOC_010576 CU861451.1 non-coding downstream 551115 17120064 ~ 17120186 (-)
XLOC_010568 NA non-coding downstream 1067221 16593349 ~ 16604080 (-)
XLOC_010567 CR848667.3 non-coding downstream 1097771 16573414 ~ 16573530 (-)
XLOC_010597 AL929304.1 non-coding upstream 669803 18368914 ~ 18372540 (-)

Expression


Co-expression Network