XLOC_010594


Basic Information

Item Value
gene id XLOC_010594
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 17823447 ~ 17824848 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022138
CATAGAATAAAGTAAGCAAGGTGAGCGCTGAATTTGAGAGAGAAGCCACTGTGCACCGTGGATCTTTACAGCTGCTGAGGAGCTCTTGGAGTAAGACAGAGATCTGAGACTAAAGTTGGACAATGAAGAACCGACAGGAACTGAACGGCTTGTGAGGGCAGTAATGTTGACCTGAACAGGGGCAGTCTACAAGTGACCGCCTAAAGATACtggaatcatcatcatcattgaagGTGTTAAAGTTCTTATAGACCTCATCTTTACCAGACTCAGGCAAACTCTGCTTTCACTCTGCCCAAAGCCCCAGCTGGACTGTTTTGGCCCAGGGTATCCGATCAGGCCCCAGAAGTGACTGTGGAAACTTGACTGGCCCTGGCTCGCATTGGCACACTAACTTAAGTCGTGAGAGTGAAAACACAGCTCTTGACTACATTTCCAGAGCTTGTGTCCACCTGGGTTTGACCTATGCATTTTAACTGTGACAAAGAATGGTGTTTTTACAAGTGACTGTCTGGTTAACACAGGAAGATATTAGAGGGTAGTATTCCCATGAACTGCGGTGTCCTCTTTGCTTCAATGAATCTGCATTATTCTGGCAAATAATACCTTTCATGCATTTAATCAGATAAATTTCTCTCTAAgtctattgttttaaataatattgtttaatgtcCAGTTGTTTGaaactgctgtttaaaaaaagatgatcAAAGTCCTTGTTAAGATGAtcagtttgtttaaatgtacatgttttattgtgtattatatGATGTATTGTCT

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001706 endoderm formation biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0060973 cell migration involved in heart development biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0061008 hepaticobiliary system development biological_process
GO:0001889 liver development biological_process
GO:0003260 cardioblast migration biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060026 convergent extension biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:0003318 cell migration to the midline involved in heart development biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022138 True 780 lncRNA 0.41 3 17823447 17824848

Neighbor

gene id symbol gene type direction distance location
XLOC_010593 zgc:174935 coding downstream 109588 17711215 ~ 17713859 (-)
XLOC_010592 NA coding downstream 116683 17704830 ~ 17706764 (-)
XLOC_010591 si:dkey-17m8.1 coding downstream 124336 17671301 ~ 17699111 (-)
XLOC_010590 ccdc106a coding downstream 162853 17639896 ~ 17660594 (-)
XLOC_010589 m6pr coding downstream 236564 17578607 ~ 17586883 (-)
XLOC_010595 NA coding upstream 312794 18137642 ~ 18140068 (-)
XLOC_010596 NA coding upstream 320569 18145417 ~ 18150006 (-)
XLOC_010597 AL929304.1 coding upstream 544066 18368914 ~ 18372540 (-)
XLOC_010598 NA coding upstream 648095 18472943 ~ 18501141 (-)
XLOC_010599 FP067425.1 coding upstream 755876 18580724 ~ 18583338 (-)
XLOC_010626 CR392024.2 misc upstream 3070264 20895112 ~ 20895175 (-)
XLOC_010583 CR936322.2 non-coding downstream 576084 17247222 ~ 17247363 (-)
XLOC_010582 CR936322.1 non-coding downstream 578400 17244908 ~ 17245047 (-)
XLOC_010576 CU861451.1 non-coding downstream 703261 17120064 ~ 17120186 (-)
XLOC_010568 NA non-coding downstream 1219367 16593349 ~ 16604080 (-)

Expression


Co-expression Network