XLOC_010595


Basic Information

Item Value
gene id XLOC_010595
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 18137642 ~ 18140068 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022139
AGGTCGATGGTATAGGGGTGAAATACTTGGGAGGAAACAACAGCCCCCGGAGAGCCCCTCTCGTGTGGTCATCATGGTAACCGGGTGAAACCTTACGGTTTCACTTACAAAAAAAGCACCGCAATAGCGCCGTAATGGTGCACTAGGTGTGACTTCTGTCCAGTGCTGAGATTCTCATCTGGAGATTACCACACGGGTAAATGGCAGAGGTATTCAAAACCTTAACGTTTACGATGGACATCCAAGTCTTGCACTTGCATCCAGGCCGGACCCGAAAATGCGGTAAATGCCCGTTCCCGAGGTAGCCTCTTAGAAAACCGAAGCCCGGTCGGGGCGGTGGTCGCGACGGCGCTGCGGAGGCCTGCGGCTCGCGCGGCATCGGTGCGCCGCAGTGGTTGCGGGGTGTGGCAGGGATTTCGGTCCTCGTGGCGCCGCTGCGGTTGCGTCGGTGGCGCTGGGGTGGCGGCCCAAGGGGCGCCGGCGTGCCACTACCCATAGACGCCCTCGGGGGCGGCTGATCTGGAGGGACGAGGGGGTTCGCGGGACTTTAATGAGAAACGGACCACAACTTCTCACATTGCTTCCGGGACTTTCCCCCCTCGTTCAGCCGAGGGATGACAAAAAGGCATGAAAGGTAAGTGCCATACCTGTCCACAAAACTCTCTCCTAACTTAGTACTCTCTGCTGGTTTTCTAGAGAAACAGCGAGATAGAGGAGAGGGACATGGCAGGGACTTCCATTTGTGCCAGCAGGTGGGGACAGATCGAAGGAACGATTCAAGGGCGTGGAAGACGAGAGGGTATCCGGTCACACATTGATACCAAGCCTAAATAGTATATATGCATCAGCCCTCACTGCGTGTCTGACGGTGGACTACTGGAGTTCATCACAGGCTCGACGAGAATGCAGAACTTTGCAATACATTTGCTCTCCTTTCTAGATCCTTCCAGCGGGTTTACAAGGATGAGGCTGTCGGCATCTTTTTACACAGCATTTACAATTTAATACACATTAAAGACGTGATGGTGTGGTACCCACATAAACATTGGCCAACttactgaaaaataattttaggttTACTTTTAAATAGGTCAGATGATATATTTTCCTTtcagtatacacacactcacacagatacttatacatatataaagagtAAAAATGCTGGTATTAACACTGCTTTTGattttgtgctatataaataaaacttgaactTGAGTTGCATTTAGAATCTGAACTTGAATTagggttgaagtttatttaatcagaaatgcagatcagatctgttgatcaaatctttgtaaatattttatactgtaacaaCTATACTTGTTTTTTTATGGATTGTTGCCTAAATGGGATCTGATACAGATAATCTTATACCCaatgaaaaaatgacaaaaagacatatttaaaaacttattttaattgttttaatatttgatgttgtttttattttaatacagaagctctgaaaaccttttgtaaaataaaaaagattttccagtaccttgtttacatgtttctgcattattccagacgttctgtgttatttgtg

Function

GO:

id name namespace
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0030902 hindbrain development biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022139 True 1558 lncRNA 0.45 2 18137642 18140068

Neighbor

gene id symbol gene type direction distance location
XLOC_010594 NA coding downstream 312794 17823447 ~ 17824848 (-)
XLOC_010593 zgc:174935 coding downstream 423783 17711215 ~ 17713859 (-)
XLOC_010592 NA coding downstream 430878 17704830 ~ 17706764 (-)
XLOC_010591 si:dkey-17m8.1 coding downstream 438531 17671301 ~ 17699111 (-)
XLOC_010590 ccdc106a coding downstream 477048 17639896 ~ 17660594 (-)
XLOC_010596 NA coding upstream 5349 18145417 ~ 18150006 (-)
XLOC_010597 AL929304.1 coding upstream 228846 18368914 ~ 18372540 (-)
XLOC_010598 NA coding upstream 332875 18472943 ~ 18501141 (-)
XLOC_010599 FP067425.1 coding upstream 440656 18580724 ~ 18583338 (-)
XLOC_010600 fhod3b coding upstream 468910 18608978 ~ 18652646 (-)
XLOC_010626 CR392024.2 misc upstream 2755044 20895112 ~ 20895175 (-)
XLOC_010583 CR936322.2 non-coding downstream 890279 17247222 ~ 17247363 (-)
XLOC_010582 CR936322.1 non-coding downstream 892595 17244908 ~ 17245047 (-)
XLOC_010576 CU861451.1 non-coding downstream 1017456 17120064 ~ 17120186 (-)
XLOC_010602 CR848057.1 non-coding upstream 724202 18864270 ~ 18864386 (-)

Expression


Co-expression Network