XLOC_010596


Basic Information

Item Value
gene id XLOC_010596
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 18145417 ~ 18150006 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021794
CAAAAAATTCATAAAGTACACCATGATAAAGACGATGACAATGACCTTTCTGTTGTTGCGGTGGAAACCATAACTCCAGAACCAGGTGAGTTTGTATTTACTTAGAAAGAAATTACTTTGAATGTGCAATCATGGTATAAGATAGACCAAGCCAACGTATTTGAAAATGAACCACATCTACCACAACTGTTTGCTGAAATGTTTtagctttaacaaaaaaaaaaaaaaaaaaacagccaataccAGTCTTGTTCTATTGTACTTTTATGGAAATATAAATACTTGATCTTGCACTAATGCCACTTTTATATACTCCATATTACACAAGGTAaatttttagttatttagcagGCACTTGTATGTACCATTATGTACCAGATGTATGTACCAGATGTATGTACCATAACTGTATTTTGCtacattgtttgtttttaaaggacAAGATGATGGGTCTTCCTCTATGGTGGAAAAAGACAAGCTGATGCTCATGGCCCAGACAATACAAACACTTAAACAGGAACGAGATTTTCTCCGCCAAACTGTCCTAAAATTGTCAAACAGAGGggcaaaaaaagtaaagaaagtcTTGGACACAAGCACTGAATGCAGCACCAGTAACACTGATGAGGAGTCCATGACTTCTTCCTCCTCTTCAGATTCACCTGATAGTGATATTCCTCGGAAGAAGAGAAAGAGTCATAAGAAGACAAAGAGGGCCAGCAGGTCAAAATCTACCAAGCACAGCACACGTGCAACAACCCCTGATGACGTACTAAGGCGGTACAACAAAGTTTTCAATGCCTATAAAAAAGAAGGGAGCATTAGTAAAGCATGTGCCAAAGTTGGGGTTGACCGTAATACTCTCGCATTAACAGCTGTTGTGGCTGAAATTCAGCTTGTTGATGCTGAGTTTTACAGAAGCATCCCTAAATTCAGAACCGAGGAGAAACTTTTTGACTTTGCCAAGAGGTGCCTGCAGTCGCTGACAACAGACTTAAAATCTGTCATTGAAAACGCCAAACAAGAGCGCAAACTTCTGCCAATAAAGTATAAGTTCAGATAGAAATATACAAATCTCTTATGTGCAGATGTTGTTTAAAGTTAAATTGTAGATTCACATCAGTAGTTATTAATTGTTACCCCATTTGTCGTTCCAACCCCTGAGACCTGAAATGACACTGAagagaataaaatgtaaaataatgcgtTTTTTGTCCACACAAAAGTATTATCATAGCTTCATAgcattacaattgaaccactgaagacaaATGTACTCTTTTGATGTTATTGGTACTGTATCTTTCTAGACTTTAAATGCCTTGCAACTCTGGCTTTCTATGGAGGGTCAGataattctaaaatatatataatataataatatataatgataataataataataaataatcagctaaaatatttttacaaataaaataaaaaagtagatttttttattttattttctgaatgaAGGACTCAGGTTTGGAATAACAGCAGGGGGAGtaattaataatttcatttttgggtaaactatcccttcaatGTGAATTGCTGTACGTTTAATGTGATATGATGTTACTTCCAACATTTATCTAAAAGTTTTAATTTActctaagattttttttgtttatggcATTATGTTTAATCTCTTTAATTTAATAGTGTCTGTAAGGTTCTATATTGCAGCCATATTTCTAAGGTTTTTCTTTATGTGTTGCACTGTtgagaataaaaatgttaataaacattgTTTACCTTTGCtgcatgttttctcttttttagtcCTCTATA
>TCONS_00020759
CTCGCTCATGATGCGTCTTTTTGCAAATTGTTAGCCCTAACTCTTTAGCGAATTTTTCTTCAGTATGCCACGAAAAAAGACGATTTCTTTGACGAGGAACTGCCCCCAACGCAGCGAAGCTGAAGCTGACCTCTTGAGTGAAGaacCACCTGAATCATCCCAAAAAATTCATAAAGTACACCATGATAAAGACGATGACAATGACCTTTCTGTTGTTGCGGTGGAAACCATAACTCCAGAACCAGgacAAGATGATGGGTCTTCCTCTATGGTGGAAAAAGACAAGCTGATGCTCATGGCCCAGACAATACAAACACTTAAACAGGAACGAGATTTTCTCCGCCAAACTGTCCTAAAATTGTCAAACAGAGGggcaaaaaaagtaaagaaagtcTTGGACACAAGCACTGAATGCAGCACCAGTAACACTGATGAGGAGTCCATGACTTCTTCCTCCTCTTCAGATTCACCTGATAGTGATATTCCTCGGAAGAAGAGAAAGAGTCATAAGAAGACAAAGAGGGCCAGCAGGTCAAAATCTACCAAGCACAGCACACGTGCAACAACCCCTGATGACGTACTAAGGCGGTACAACAAAGTTTTCAATGCCTATAAAAAAGAAGGGAGCATTAGTAAAGCATGTGCCAAAGTTGGGGTTGACCGTAATACTCTCGCATTAACAGCTGTTGTGGCTGAAATTCAGCTTGTTGATGCTGAGTTTTACAGAAGCATCCCTAAATTCAGAACCGAGGAGAAACTTTTTGACTTTGCCAAGAGGTGCCTGCAGTCGCTGACAACAGACTTAAAATCTGTCATTGAAAACGCCAAACAAGAGCGCAAACTTCTGCCAATAAAGTATAAGTTCAGATAGAAATATACAAATCTCTTATGTGCAGATGTTGTTTAAAGTTAAATTGTAGATTCACATCAGTAGTTATTAATTGTTACCCCATTTGTCGTTCCAACCCCTGAGACCTGAAATGACACTGAagagaataaaatgtaaaataatgcgtTTTTTGTCCACACAAAAGTATTATCATAGCTTCATAgcattacaattgaaccactgaagacaaATGTACTCTTTTGATGTTATTGGTACTGTATCTTTCTAGACTTTAAA
>TCONS_00020760
GCTCATGATGCGTCTTTTTGCAAATTGTTAGCCCTAACTCTTTAGCGAATTTTTCTTCAGTATGCCACGAAAAAAGACGATTTCTTTGACGAGGAACTGCCCCCAACGCAGCGAAGCTGAAGCTGACCTCTTGAGTGAAGaacCACCTGAATCATCCCAAAAAATTCATAAAGTACACCATGATAAAGACGATGACAATGACCTTTCTGTTGTTGCGGTGGAAACCATAACTCCAGAACCAGgacAAGATGATGGGTCTTCCTCTATGGTGGAAAAAGACAAGCTGATGCTCATGGCCCAGACAATACAAACACTTAAACAGGAACGAGATTTTCTCCGCCAAACTGTCCTAAAATTGTCAAACAGAGGggcaaaaaaagtaaagaaagtcTTGGACACAAGCACTGAATGCAGCACCAGTAACACTGATGAGGAGTCCATGACTTCTTCCTCCTCTTCAGATTCACCTGATAGTGATATTCCTCGGAAGAAGAGAAAGAGTCATAAGAAGACAAAGAGGGCCAGCAGGTCAAAATCTACCAAGCACAGCACACGTGCTTTTATCTTTCTACAGCAACAACCCCTGATGACGTACTAAGGCGGTACAACAAAGTTTTCAATGCCTATAAAAAAGAAGGGAGCATTAGTAAAGCATGTGCCAAAGTTGGGGTTGACCGTAATACTCTCGCATTAACAGCTGTTGTGGCTGAAATTCAGCTTGTTGATGCTGAGTTTTACAGAAGCATCCCTAAATTCAGAACCGAGGAGAAACTTT

Function

GO:

id name namespace
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0003002 regionalization biological_process
GO:0060026 convergent extension biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000091144

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021794 False 1794 lncRNA 0.34 3 18145417 18149149
TCONS_00020759 False 1126 lncRNA 0.40 5 18145893 18150006
TCONS_00020760 True 775 lncRNA 0.43 5 18146258 18150003

Neighbor

gene id symbol gene type direction distance location
XLOC_010595 NA coding downstream 5349 18137642 ~ 18140068 (-)
XLOC_010594 NA coding downstream 320569 17823447 ~ 17824848 (-)
XLOC_010593 zgc:174935 coding downstream 431558 17711215 ~ 17713859 (-)
XLOC_010592 NA coding downstream 438653 17704830 ~ 17706764 (-)
XLOC_010591 si:dkey-17m8.1 coding downstream 446306 17671301 ~ 17699111 (-)
XLOC_010597 AL929304.1 coding upstream 218908 18368914 ~ 18372540 (-)
XLOC_010598 NA coding upstream 322937 18472943 ~ 18501141 (-)
XLOC_010599 FP067425.1 coding upstream 430718 18580724 ~ 18583338 (-)
XLOC_010600 fhod3b coding upstream 458972 18608978 ~ 18652646 (-)
XLOC_010601 fhod3b coding upstream 539924 18689930 ~ 18960613 (-)
XLOC_010626 CR392024.2 misc upstream 2745106 20895112 ~ 20895175 (-)
XLOC_010583 CR936322.2 non-coding downstream 898054 17247222 ~ 17247363 (-)
XLOC_010582 CR936322.1 non-coding downstream 900370 17244908 ~ 17245047 (-)
XLOC_010602 CR848057.1 non-coding upstream 714264 18864270 ~ 18864386 (-)
XLOC_010604 CR936240.2 non-coding upstream 995141 19145147 ~ 19150743 (-)

Expression


Co-expression Network