XLOC_010601 (fhod3b)


Basic Information

Item Value
gene id XLOC_010601
gene name fhod3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 18689930 ~ 18960613 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020767
ATGCTGTATGTAGATGGAATGAATGGGCTTATCGGACACAATGAAACCGTACAGTGGCTGTACACACTGGTTGGATCAAAGtTCCGGTTGGTTGTGAAAACTGCTATGAAGCTGCTGCTGGTTTTTGTGGAGTACACCGAGAGCAACGCACCTCTCCTCATCCAAGCCGTCAACAGCGTTGACACCAAACAAGGCTCTAAGCCCTGGTCTAATGCCATGGAAATCCTTGACGAGAAAGATGGAATGGACACTGAGCTGCTGGTTTATGCCATGACACTAATCAACAAGACATTAGCTGGTCTGCCTGACCAGGACTCCTTCTATGATGTGGTTGACAGTCTGGAGGAATGGATGTTGTGCTAA
>TCONS_00020768
ATGGCTACGTTTGCATGCAGGGTGCAGTTCTTAGATGATACAGATCCATTTAATAGCACAAATTTTCCGGAGCCGACCAGACCCCCACATTTCACATTCAGAGAGGATATTCCGCTCATCAATCAGATCGCCGGAGTTCACAGACTTCTCAAAGCACCTCACAAGCTTGATGACTGTGCTTTGCAGTTGTCTCATAATGGCAGTTATCTGGACCTGGAGTCCACCTTGGCTGAGCAGAAAGATGAACTTGAAGGCTTTCAGGAGGATGGAGGGAGAGGAAAGAAGCACAGTATTGTACTTAGAACACAGCTGTCTGTCAGAGTCCATGCCTGCATAGAAAAGCTGTACAACTCGACGGGTCGTGAGCTACGAAGAGCACTGTTCTCTCTCAAGCAAATCTTCCAGGATGATAAGGATCTGGTTCATGAGTTTGTGATGGCGGAGGGACTCACATGTCTTATTAAAGTGGGAGCTGAAGCTGATCAAAACTACCAAAACTACATTCTCAGAGCACTTGGACAGATCATGCTGTATGTAGATGGAATGAATGGGCTTATCGGACACAATGAAACCGTACAGTGGCTGTACACACTGGTTGGATCAAAGtTCCGGTTGGTTGTGAAAACTGCTATGAAGCTGCTGCTGGTTTTTGTGGAGTACACCGAGAGCAACGCACCTCTCCTCATCCAAGCCGTCAACAGCGTTGACACCAAACAAGGCTCTAAGCCCTGGTCTAATGCCATGGAAATCCTTGACGAGAAAGATGGAATGGACACTGAGCTGCTGGTTTATGCCATGACACTAATCAACAAGACATTAGCTGGTCTGCCTGACCAGGACTCCTTCTATGATGTGGTTGACAGTCTGGAGGAGCAGAACATGGAGGCTGTTGCCCAAAGACACATTAGTAGAAAGGGCACAGATCTGGACTTGGTAGAGCAGTTCAACATTTATGAGGT
>TCONS_00020770
AGATGTCCCGTCCCGTCTGCGGCAGTCTGCCTCAGCACCTTGCCTGCCCGACATGCCCTTGGATATTACCGGCCCTCCTCTTGCGAGAAACTACTGCAGAAACATAGCAACCACTAAACACTAACACGGGACAGCGGAGTGAGGCGGAGCGTACCTGGATTCTTGACACTTTTACCCTGCGTAGGATTTTTTTTAGTCGctgtacttttttgttgttgtgctgaCTTCCCAAATCGACGTGTATGGATGTATCATGGCTACGTTTGCATGCAGGGTGCAGTTCTTAGATGATACAGATCCATTTAATAGCACAAATTTTCCGGAGCCGACCAGACCCCCACATTTCACATTCAGAGAGGATATTCCGCTCATCAATCAGATCGCCGGAGTTCACAGACTTCTCAAAGCACCTCACAAGCTTGATGACTGTGCTTTGCAGTTGTCTCATAATGGCAGTTATCTGGACCTGGAGTCCACCTTGGCTGAGCAGAAAGATGAACTTGAAGGCTTTCAGGAGGATGGAGGGAGAGGAAAGAAGCACAGTATTGTACTTAGAACACAGCTGTCTGTCAGAGTCCATGCCTGCATAGGTAAGTAACAAGATGCTTTTTTCCCTTTCCAATAAATTCAAAATGGTGAGAAAAAAAGTACTCAATCTTCACCCTTTTCGATGTTTGGCCTAGTCAGTAAATTTAGGCTGTATCAGATTGTTTAGGAATTACTTTCTCATTTGTTGCTTGTTGAATGACAGATGTGTAAATTATATGTAGCGAGGCCCTTGCTTGATTTTTACTGTGTGGTAAAGTTTTCCTGTTGCTAATAGGCCCTCACGCCGCAATGTTTATGATCTTGTTTAAATATGTTCCATGCTTGATTtctcaatcaataaaaaaacagcTGATGCAGCAACTTTATAT
>TCONS_00020771
ATCGCTGTAGACATTTAGACAGGCTCTAGATGTCCCGTCCCGTCTGCGGCAGTCTGCCTCAGCACCTTGCCTGCCCGACATGCCCTTGGATATTACCGGCCCTCCTCTTGCGAGAAACTACTGCAGAAACATAGCAACCACTAAACACTAACACGGGACAGCGGAGTGAGGCGGAGCGTACCTGGATTCTTGACACTTTTACCCTGCGTAGGATTTTTTTTAGTCGctgtacttttttgttgttgtgctgaCTTCCCAAATCGACGTGTATGGATGTATCATGGCTACGTTTGCATGCAGGGTGCAGTTCTTAGATGATACAGATCCATTTAATAGCACAAATTTTCCGGAGCCGACCAGACCCCCACATTTCACATTCAGAGAGGATATTCCGCTCATCAATCAGATCGCCGGAGTTCACAGACTTCTCAAAGCACCTCACAAGGTATGACATTTCGAAAAGAAACTCACTTTTGTTCCCTCGCTCtctctaaattatttattatgagtttttattgtttatttttgatgCAACTGCAATAATGTTTTGCTGTAGCAGTAATTCTGGAGGGCATCATGCTGTTGTATGGCAAGCCCTAATAACATTTACTCGGTTAAACTTTGTTTTGCAGTAATTTCTTGTGTGGGAACTAACTGCTGAGTTTGGGCTTAGACTAGGTTTATGGATAGGTTAAGGGTTCATCTCTTCTACATTTAATACAGCAACCTAAATAGCTATCATTTATTGTTGAAAACATAAccactgtatatgtttttttattattagagcTTATTTTCTAAGAATTTTGGAAATATTCTAATGGCAAGAGTATCAGAAATGCTTCATTACAagcacttatttattttttactattcaGATGTTTACTAATATCTGTtccagttttcatttttattctaattGATTTGACGTTAATTTAAACTTGTATACAAACTTGTGCTTTTTTGTAAGCTGTTCCATTATGACTAAAGTAATGAGTCACACTATTTTTAAAGTTAACTGACCAAGTAGTACAGCTAAATTAGATGGATGCTATCtgtaataaatttatatattttttcacaattgTATTCAGGTAGGGTAATAAACTTCAGTAAATAGTTGCAGATAACTATAAAAATAGCGGGGATGTCTGTTTCCACAAATTTAGGATAATATAATATAGTCAATATTATCGATTAATAGTTAGGTTAACCCAAAATGAAATATGTGGCTGACTTAAATTCAATTTTATtagctaat

Function

symbol description
fhod3b Predicted to enable actin filament binding activity. Predicted to be involved in actin cytoskeleton organization. Predicted to act upstream of or within regulation of stress fiber assembly. Predicted to be active in cytoplasm and cytoskeleton. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy. Orthologous to human FHOD3 (formin homology 2 domain containing 3).

GO:

id name namespace
GO:0055003 cardiac myofibril assembly biological_process
GO:0007015 actin filament organization biological_process
GO:0045214 sarcomere organization biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0051639 actin filament network formation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0005737 cytoplasm cellular_component
GO:0051015 actin filament binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081028-61 Predicted to enable actin filament binding activity. Predicted to be involved in actin cytoskeleton organization. Predicted to act upstream of or within regulation of stress fiber assembly. Predicted to be active in cytoplasm and cytoskeleton. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy. Orthologous to human FHOD3 (formin homology 2 domain containing 3).

Ensembl:

ensembl_id ENSDARG00000061904

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020767 False 363 mRNA 0.48 5 18689930 18702249
TCONS_00020768 False 959 mRNA 0.47 9 18694830 18960333
TCONS_00020770 False 917 lncRNA 0.44 3 18896967 18960586
TCONS_00020771 True 1261 mRNA 0.36 1 18959353 18960613

Neighbor

gene id symbol gene type direction distance location
XLOC_010600 fhod3b coding downstream 37284 18608978 ~ 18652646 (-)
XLOC_010599 FP067425.1 coding downstream 106592 18580724 ~ 18583338 (-)
XLOC_010598 NA coding downstream 188789 18472943 ~ 18501141 (-)
XLOC_010597 AL929304.1 coding downstream 317390 18368914 ~ 18372540 (-)
XLOC_010596 NA coding downstream 539924 18145417 ~ 18150006 (-)
XLOC_010603 pimr98 coding upstream 64410 19025023 ~ 19026733 (-)
XLOC_010604 CR936240.2 coding upstream 184534 19145147 ~ 19150743 (-)
XLOC_010605 dnah11 coding upstream 220550 19181163 ~ 19373310 (-)
XLOC_010606 CR936240.1 coding upstream 229901 19190514 ~ 19190631 (-)
XLOC_010607 BX005032.1 coding upstream 461682 19422295 ~ 19424133 (-)
XLOC_010626 CR392024.2 misc upstream 1934499 20895112 ~ 20895175 (-)
XLOC_010595 NA non-coding downstream 549862 18137642 ~ 18140068 (-)
XLOC_010608 NA non-coding upstream 535131 19495744 ~ 19497804 (-)
XLOC_010610 BX005389.2 non-coding upstream 656475 19617088 ~ 19618599 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_07421716_07426983 FHOD3B coding CI01000016 null 7421590 ~ 7442256 (-)