XLOC_010615 (CU855948.1)


Basic Information

Item Value
gene id XLOC_010615
gene name CU855948.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 19828376 ~ 19834469 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020787
cacaagaagaataagtttggtttttcaaaggtTTCACGTGggttccggtcagaaagatgcatatgaggaagctcgactcaaacatccacacgcaactgatttctgactggtagacagacgaggatgatgatcgcctgtcatacatctaaagacagaacaggtttgtttgcaattattttaaacacatactgtcaacattatgtcattgatctattacaacctgtgagttttgccctggcactatactaaagtgatgttttgttttgtaaatgtatctgattaagggacagtatagacacatctataccatgatgaagaaaaattacttggaacaaagaggctggataaaaggcagcacgactgactgtagttttaaaatcatgcaacgtcataaagcagcagctgggcctgattctcacaaaaccaaaacagacgtgatgaaattccagatgtaaacacatttgaccttgctttggccaatttgatttggaaaagcttgaaaatcaactaaaggagcagcccgaacaaatgaagaaactggtaagttcaagctctgctaatttcaaagtgttttaagtttattttttttttattgttttatttatttttttttttgcttcgtaggtagcctacttttttcctaattttttcttttttttacattagtacttgttcactactaattatctgtttatcttttaatcacagatgtagtgaggacaaatgtccataccacgccactgataaagaagtggaaaaatgcattacaagatagctacaacttgcccctgacagggatggaggaagaaagaagagaaagctaatgtgtcaaatgtctacatcactattttgttttattttttaaacaacattttaagtgtattaggatgttccctgatacttgaacaatttgtttctttcatttgcatttatatatatatatatatgtatgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatatagtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtatatatgtatgtatgtatgtgtgtgcgccaaattctgaagaaacatcttgatacatttttaataaacgtaatacaaataaaattataaatataaaattgcacaagacgtgtatatatatgaaatgtataatcatctcactcatgtcttgctgtttgtgcaattgattttgttcaagtttatttaaaaataagtttgactttatacttctgcaattatatatatatatatatatatatatatatatatatatatatatatatatatatttgtttgtttttttattattttaatgttttattaaaaaatgtttcaagatgtttcttcagaattctgcagtactttttacaagtttgacttggatattttacggattgtcattggtatttttaagatgtttcttgctatatcttaaattggtttctatatttaggtttatataaaatttagctgttttttacaaatttttaattcaagtctattgggaaaacagggttgttttaaaaacatctgtgtttgtgtgtaatttttagaatttttgtttaaatctttctgtgtgtctttattgtgttgttttattgttgtttttatattgatattcttgtgcactacaaaattatttataaaattttagtactatttttttttcttgcaatcaataaacgtttaacatttatttattttgtcatttgtctgattattttcgttacagaatatgtatgcagtttgcactttattcaaaggttaaacgcagtgcttacactttgtgtttacattatagcctgtgtttgctgtaatataaattcaaatggttgtaataccatatatcaagtaccaatgtaataccaaaaggttttataaggtgtataaatacggagtcgcgccagctccgggccgcagcgcacattaccctcgcgccgatttcggcgcggatgcgcagcgtcggcacgcttacggccgccgcatctggcccgcttgattcgggccggaatcaggcagtgagtccacaggcatccggcccgagtccggcagccgaagttgggccgaggggtaagtctccggcaggcgacaatctagccggaactggcccgagtgtattttgctatctggggtaGGTGGTTACTAATTTACCTatcactgactttttttttttttaatatgctaaTTTTAACTCCCTTTAGAGTTAAAATGTAGAGTTGTACCATTCTTCAATACATTCAACCAATCTCCAGGTCTTGTGAGggcgcttttagcttagcttagcataaatcattgaattagaccag

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0048731 system development biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0048762 mesenchymal cell differentiation biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0060896 neural plate pattern specification biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0060897 neural plate regionalization biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0048785 hatching gland development biological_process
GO:0048513 animal organ development biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0048519 negative regulation of biological process biological_process
GO:0048523 negative regulation of cellular process biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0060485 mesenchyme development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0050789 regulation of biological process biological_process
GO:0061053 somite development biological_process
GO:0061311 cell surface receptor signaling pathway involved in heart development biological_process
GO:0050794 regulation of cellular process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0001667 ameboidal-type cell migration biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117336

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020787 True 2336 lncRNA 0.33 3 19828376 19834469

Neighbor

gene id symbol gene type direction distance location
XLOC_010613 NA coding downstream 7064 19807528 ~ 19821312 (-)
XLOC_010614 NA coding downstream 14574 19811634 ~ 19813802 (-)
XLOC_010612 BX005389.3 coding downstream 193906 19631414 ~ 19634470 (-)
XLOC_010611 BX005389.5 coding downstream 200544 19626526 ~ 19627832 (-)
XLOC_010610 BX005389.2 coding downstream 209777 19617088 ~ 19618599 (-)
XLOC_010616 hdac9b coding upstream 5677 19840146 ~ 20006270 (-)
XLOC_010617 ahr1a coding upstream 177721 20012190 ~ 20038263 (-)
XLOC_010618 BX511151.1 coding upstream 207388 20041857 ~ 20043276 (-)
XLOC_010619 NA coding upstream 315108 20149577 ~ 20152725 (-)
XLOC_010620 plekha8 coding upstream 431030 20265499 ~ 20294236 (-)
XLOC_010626 CR392024.2 misc upstream 1060643 20895112 ~ 20895175 (-)
XLOC_010621 NA non-coding upstream 474901 20309370 ~ 20312666 (-)
XLOC_010623 CR354600.1 non-coding upstream 559224 20393693 ~ 20393809 (-)
XLOC_010627 NA non-coding upstream 1089013 20923482 ~ 20927125 (-)

Expression


Co-expression Network