XLOC_010617 (ahr1a)


Basic Information

Item Value
gene id XLOC_010617
gene name ahr1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20012190 ~ 20038263 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020794
AACTAGTCAAGGCTAAGGGTGTTTTAAGTATATGATTGATAAACTACAAAAATGTCTAACTTTTGGATAGCAGAATGTGCGTTTGTGTTGTAAATTAGGCAATTCTTGAGGTTAGATTGACAGAGAGCTTGTCAGTTTAGCTTAGCCCCTCTGACATGAAGTGTTAATTTACTCTCATGTCAACCACTGGGCTTTAACTGTTGTAAAGAGGTGAAAGCTTCAGATTTAAAGAGCATTGGGGGGTTATTTTGTGCTTTTTGGGTGGAAACCTCTAACCCAACGCAGGTTAAGGTTTTGCTAGCCTAGCACTGAAAAAAACACTCACAAACCACGAATCTGTTTCTTTGGAGATTATGAGCTCCAGTAATATTTATGCAAGTCGCAAAAGGAGGAAACCTGTCCAGAAAAgTGTGAAGCAGCCTCTTACATGTGTTAAATCCAATCCCTCCAAACGACATAGAGACCGTATGAATGAAGTTCTGGCCAGCTTGGCCAGGGAGATTCCTTTTCCACAGGAGATCGTATCCACGCTGGACAAACTCACCATACTGAGGCTAAGTGTGAGCTACTTGCGGGCCAAAAGTCACTTCAAAATAACCCTGAACTCAAAGAGTTCCAGCCAACAAGCAAATAACACTAAACAGGCTCAGGAGCAGCCAGAGGGGGAATTTTTGCTACAGGCTATAAATGGCTTTTTGTTGGTGGTGACCTCCAGTGGGATAGTCTTCTACGTTTCTTCCAACATTGAGGACTACTTGGGGTTCCATCAGTCGGATGTCATTCATCAGAGTGTGTATGAACTCATTCATACTGAAGACCGGCATGAGTTTCAGAGACAGCTCCACTGGGCCCTCAACCCTGGCTTTACCCCAGACTCTAGACAGCTTGTGCAAGcTTCCCCTGATGCATCAAGGACGTGCTACAGTCCAGAGCAGTTGTCACTAGAGAACTCTACTTGTCTGGAACGTAACTTTATTTGCAGGTTAAGATGTCTGTTGGACAGCACTTCTGGTTTTCTTGCCGTGAACTTCCAGGGCCGTTTGAAGTTCTTGTATGGGCAGAATGAGAGTACAGGAGATGGCAAACGCATCCCGCCTCAGCTGGCCCTGTTTGCCCTGGCCTGCCCTCTACAGCCACCTTCCATACTGGAGATACGCACCAAGAACTTAATGTTCAAAACCAAGTATAAGCTGGATTTCACACCTATTGCGTGTGACACAAATTGGAATTTTGTTCTTGGCTACACAGAGGCAGAGCTCTGTAATAGTGGTTCAGGCTATCAGTTCATCCATGCAGCTGACATGATGTACTGTGCTGAGGGCCACATGCGGATGATGAGGACCGGTAAAACTGGGTTGACTGTTTTCAGACTGTTGACTAAACAGAACCGCTGGGTTTGGGTTCAGTCCAACGGCAAACTTGTCTACAAAAATGGGCAACCAGATTGCATCATCACCTCTCACAGAGTCATAACGGCTGAGGAAGGTGAGGAGAACCTGAGAAACCGTGCAATGATGCTTCCCTTCAACTTCACTACGGGCGACGCTGTTCTTTGTGCCATGAACTGTCCCACATCTTCTGATCCTGCCTCTTCAGATGGCAATACCCAACCCAAAACCACTAGAACTGTTAACCCTGACTCATTGCTGGTCTCTTTGCTAAAGCAACCCAAGTCAATATATTTATCTCCTGCAGATGAGCGCTCAGTGTTGGTACAGAGCTTAGGGAACAAGGATCTGGATGGGATCTATTCCATTAACTCACAAGAAAGTGTTTCAGTCTCTAGAAGCTGTCCATTCAAACAAGAGTCAGTCTTCAGCTCTGAAAGAGATGACAGCTGTGAAATCCTGAACTTCATGGGAAGTTTAGGGATCAGCCTTGAAGATCTAAAGTTCCTTCAACATGAGGATCTGTTCATCAATATGGATTTAGACAGTCATAATGATATGGCAGACTTGTCAGATGACATTTTATCTCATGTACAACAGTCTCTTAAAACAAAGATGGACTGTACAGTGTCAAAAAACACCCAGGGCAACATGAAGGAGCAGGAACTCATTAGGAACCCGGCCCAGACCATAATACCAAATGATTCATGTGATACTATTACATTACTATCTCAGGAACAACAAATGACTTTCATAACAGACAAGACTGAACCAAAGATTCAACTCACACAAATACAACCTTATACTCCACAGAAGGGAATAACTTATCTCCAAATAGATCCTCATGAACACCAAGACACAAGGCCTCAGTCATACAATGGGACAGGAATCACACTACCCAAAAGTTCACACAGCACAATTCAGACAATAAGCCAACATTTGCAATTCTCAAACCTTCCACCTTTCCATGAGCAAGTGTGTGAAGCACTCAGAAGTCCTCAGGTTTGTGGGAATATGGCTGAAGTTATAGACAGCGATATACAGCAGGTTTCTCCACTCTTCCCGCCAGAACTCCAGCCATCAGGATGTTTTTACCTGGAGAGGCCCATTCTGGATCCAAAGCTGTGCACCAGCTCTTCCCAGCAGCTCTCTTCATCTCAAACCACTGAAGGTGAACCAGTGGAGTTTACCACTCAGGACCTCGAGGACCTGATAAATGACATGAATGGTGTTGGAGAGAGGAACAACTACTCAGGACTGGACAGAGGAATGGACATAAGATCGAGCCTGGATCAACAAGCTTACATCGGAACAGTAAGAAACAAACTCTTCATATGAAGCTCAATTGCTTTCAGATCTTTTTgcacttaaagctcCAACAAGAACTAACTCTTCCAttgtaaacaaaaacagcatttattgttAGAATTTATTGATAAAAGGGACAAAATTTTGACGAAAGT
>TCONS_00020795
AACTAGTCAAGGCTAAGGGTGTTTTAAGTATATGATTGATAAACTACAAAAATGTCTAACTTTTGGATAGCAGAATGTGCGTTTGTGTTGTAAATTAGGCAATTCTTGAGGTTAGATTGACAGAGAGCTTGTCAGTTTAGCTTAGCCCCTCTGACATGAAGTGTTAATTTACTCTCATGTCAACCACTGGGCTTTAACTGTTGTAAAGAGGTGAAAGCTTCAGATTTAAAGAGCATTGGGGGGTTATTTTGTGCTTTTTGGGTGGAAACCTCTAACCCAACGCAGGTTAAGGTTTTGCTAGCCTAGCACTGAAAAAAACACTCACAAACCACGAATCTGTTTCTTTGGAGATTATGAGCTCCAGTAATATTTATGCAAGTCGCAAAAGGAGGAAACCTGTCCAGAAAAgTGTGAAGCAGCCTCTTACATGTGTTAAATCCAATCCCTCCAAACGACATAGAGACCGTATGAATGAAGTTCTGGCCAGCTTGGCCAGGGAGATTCCTTTTCCACAGGAGATCGTATCCACGCTGGACAAACTCACCATACTGAGGCTAAGTGTGAGCTACTTGCGGGCCAAAAGTCACTTCAAAATAACCCTGAACTCAAAGAGTTCCAGCCAACAAGCAAATAACACTAAACAGGCTCAGGAGCAGCCAGAGGGGGAATTTTTGCTACAGGCTATAAATGGCTTTTTGTTGGTGGTGACCTCCAGTGGGATAGTCTTCTACGTTTCTTCCAACATTGAGGACTACTTGGGGTTCCATCAGTCGGATGTCATTCATCAGAGTGTGTATGAACTCATTCATACTGAAGACCGGCATGAGTTTCAGAGACAGCTCCACTGGGCCCTCAACCCTGGCTTTACCCCAGACTCTAGACAGCTTGTGCAAGcTTCCCCTGATGCATCAAGGACGTGCTACAGTCCAGAGCAGTTGTCACTAGAGAACTCTACTTGTCTGGAACGTAACTTTATTTGCAGGTTAAGATGTCTGTTGGACAGCACTTCTGGTTTTCTTGCCGTGAACTTCCAGGGCCGTTTGAAGTTCTTGTATGGGCAGAATGAGAGTACAGGAGATGGCAAACGCATCCCGCCTCAGCTGGCCCTGTTTGCCCTGGCCTGCCCTCTACAGCCACCTTCCATACTGGAGATACGCACCAAGAACTTAATGTTCAAAACCAAGTATAAGCTGGATTTCACACCTATTGCGTGTGACACAAATTGGAATTTTGTTCTTGGCTACACAGAGGCAGAGCTCTGTAATAGTGGTTCAGGCTATCAGTTCATCCATGCAGCTGACATGATGTACTGTGCTGAGGGCCACATGCGGATGATGAGGACCGGTAAAACTGGGTTGACTGTTTTCAGACTGTTGACTAAACAGAACCGCTGGGTTTGGGTTCAGTCCAACGGCAAACTTGTCTACAAAAATGGGCAACCAGATTGCATCATCACCTCTCACAGAGTCATAACGGCTGAGGAAGGTGAGGAGAACCTGAGAAACCGTGCAATGATGCTTCCCTTCAACTTCACTACGGGCGACGCTGTTCTTTGTGCCATGAACTGTCCCACATCTTCTGATCCTGCCTCTTCAGATGGCAATACCCAACCCAAAACCACTAGAACTGTTAACCCTGACTCATTGCTGGTCTCTTTGCTAAAGCAACCCAAGTCAATATATTTATCTCCTGCAGATGAGCGCTCAGTGTTGGTACAGAGCTTAGGGAACAAGGATCTGGATGGGATCTATTCCATTAACTCACAAGAAAGTGTTTCAGTCTCTAGAAGCTGTCCATTCAAACAAGAGTCAGTCTTCAGCTCTGAAAGAGATGACAGCTGTGAAATCCTGAACTTCATGGGAAGTTTAGGGATCAGCCTTGAAGATCTAAAGTTCCTTCAACATGAGGATCTGTTCATCAATATGGATTTAGACAGTCATAATGATATGGCAGACTTGTCAGATGACATTTTATCTCATGTACAACAGTCTCTTAAAACAAAGATGGACTGTACAGTGTCAAAAAACACCCAGGGCAACATGAAGGAGCAGGAACTCATTAGGAACCCGGCCCAGACCATAATACCAAATGATTCATGTGATACTATTACATTACTATCTCAGGAACAACAAATGACTTTCATAACAGACAAGACTGAACCAAAGATTCAACTCACACAAATACAACCTTATACTCCACAGAAGGGAATAACTTATCTCCAAATAGATCCTCATGAACACCAAGACACAAGGCCTCAGTCATACAATGGGACAGGAATCACACTACCCAAAAGTTCACACAGCACAATTCAGACAATAAGCCAACATTTGCAATTCTCAAACCTTCCACCTTTCCATGAGCAAGTGTGTGAAGCACTCAGAAGTCCTCAGGTTTGTGGGAATATGGCTGAAGTTATAGACAGCGATATACAGCAGGTTTCTCCACTCTTCCCGCCAGAACTCCAGCCATCAGGATGTTTTTACCTGGAGAGGCCCATTCTGGATCCAAAGCTGTGCACCAGCTCTTCCCAGCAGCTCTCTTCATCTCAAACCACTGAAGGTGAACCAGTGGAGTTTACCACTCAGGACCTCGAGGACCTGATAAATGACATGAATGGTGTTGGAGAGAGGAACAACTACTCAGGACTGGACAGAGGAATGGACATAAGATCGAGCCTGGATCAACAAGCTTACATCGGAACAGTAAGAAACAAACTCTTCATATGAAGCTCAATTGCTTTCAGATCTTTTTgcacttaa

Function

symbol description
ahr1a Predicted to enable DNA binding activity; DNA-binding transcription factor activity; and protein dimerization activity. Acts upstream of or within cellular response to organic cyclic compound. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex and transcription regulator complex. Predicted to be active in nucleus. Is expressed in brain; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in retinitis pigmentosa 85. Orthologous to human AHR (aryl hydrocarbon receptor).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0071407 cellular response to organic cyclic compound biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0006805 xenobiotic metabolic process biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-020531-2 Predicted to enable DNA binding activity; DNA-binding transcription factor activity; and protein dimerization activity. Acts upstream of or within cellular response to organic cyclic compound. Predicted to be located in cytoplasm. Predicted to be part of aryl hydrocarbon receptor complex and transcription regulator complex. Predicted to be active in nucleus. Is expressed in brain; heart; liver; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in retinitis pigmentosa 85. Orthologous to human AHR (aryl hydrocarbon receptor).

Ensembl:

ensembl_id ENSDARG00000020046

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020794 False 2851 mRNA 0.44 11 20012190 20038263
TCONS_00020795 True 2759 mRNA 0.44 10 20013827 20038263

Neighbor

gene id symbol gene type direction distance location
XLOC_010616 hdac9b coding downstream 5920 19840146 ~ 20006270 (-)
XLOC_010615 CU855948.1 coding downstream 177721 19828376 ~ 19834469 (-)
XLOC_010613 NA coding downstream 190878 19807528 ~ 19821312 (-)
XLOC_010614 NA coding downstream 198388 19811634 ~ 19813802 (-)
XLOC_010612 BX005389.3 coding downstream 377720 19631414 ~ 19634470 (-)
XLOC_010618 BX511151.1 coding upstream 3594 20041857 ~ 20043276 (-)
XLOC_010619 NA coding upstream 111314 20149577 ~ 20152725 (-)
XLOC_010620 plekha8 coding upstream 227236 20265499 ~ 20294236 (-)
XLOC_010621 NA coding upstream 271107 20309370 ~ 20312666 (-)
XLOC_010622 chn2 coding upstream 280137 20318400 ~ 20492799 (-)
XLOC_010626 CR392024.2 misc upstream 856849 20895112 ~ 20895175 (-)
XLOC_010611 BX005389.5 non-coding downstream 384358 19626526 ~ 19627832 (-)
XLOC_010623 CR354600.1 non-coding upstream 355430 20393693 ~ 20393809 (-)
XLOC_010627 NA non-coding upstream 885219 20923482 ~ 20927125 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_07907730_07927048 NA coding CI01000016 null 7906992 ~ 7927048 (-)