XLOC_010621


Basic Information

Item Value
gene id XLOC_010621
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20309370 ~ 20312666 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022144
GATTTCAACACAGGTCATAGTTTAGACTGCGAGAAGCAGCAGTGCATGTGTAGTGGGTAAGAATatagagacaaaaaaaaacacaagattgttttgctggattttttttaagaaacccaAGACTTACCTGCGAGTCTCTGGTTGACATTAACACCTGCTGCAGTGGTGAGTTTTTTTCTCATGGAATCAAAAGATTTATCCAATAATGAACAACTGAGTTGCGGACTTTGAAGACAGGCTTCGTTATTTATGATATGAGCCATGTTTTATCTTAAttcaaatattgtaaataatgtgcagctgatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagactttTTGTATAAAATGATTATATGCGGGCAACTTGTATTCAAACAACCTACTACTGATTTAAAAATACATGATTGAATTGTAATAACATTCAGAGTTAGTTATTTAAGTTAACTAAATAAGGGAATTAATATAATTACGGTAATACACTACAAAAAGCTTGTATTAGTTTGTGTATTTACTAACgtgaactaacaatgaaaaatacattctttatagtaattatttatctttgttaatgttagttaaagaaaataaagctgttgaTGTTAACTCACAgcacattaactaatattaaaaagCATGTGTTTGGATTTTACTAATGCATCGGTCAAACTGATTAACAAATGATGTAAAAGCAGGCCTATtgttcattagttcatgttagttactaGTACAACATTATTGTAAAATATGACAACTAACGTTAATCGTGTAatccatgaaaaaaaaagtctgatcaTTTTAAACGTAATCTAATTACATTGTTATGATTTACAAACCTGATTGCCTGATCCACATCATCAGTCACTTGGTTATGCATAGTAAAAACAATGAAATGTTAActttgtttttcagactgaagaATTATACAGGATGGCTGACAGACACTTCTGGTGGAAAAGCTTCACCGGAAGGAACAAGAACAACTGTAAAGAAGCCCAGCAAGAATTTGGAAGTTCGGACAAGACAGTAAAACACACAAATGGCGAGAACAAGACTAACAATCTGATCAGCGACGAGAGGTACGATGACTCTCAGCTGGAGCCTTCCTTCAACGAAAACACGTGCCGGAGACACTTGACTGTTTCCCGCTCTGGCCGATACAAGGAGAAGAGAAGAGCGCGGGTCACCATGCGCGAGCACAACTTCTATGAGACGAGCATTGCTGTCGCAAAGTAGATAAGCAGTTTACaacaataaatgaacaaaacGAACCTGTTTCTAAAGAATTAAGCCGCTACTGTAAGTGTAACGTACGCTTTACCTGGAACGATGCGGCGAGGGCACAGCTTACAGTTTGTTTGGTCTTGTTACGTCATTCGCTTTCAGGACTGAGACAATTTTATGAAGAAAGCCTCATTAAGGTGAAGCCACTTGATTTTCAGTGATGGACAGCACCTGGATATGCTCTAACCTGGATTTGTTTGCTGAAGCCTCTTGGAGATTCAGTTATCAGCGTTGAAATGGAAAGACATATGCACCCAGCAAACACAAAACATTCCCAAAATAGTTCCTATTTGGTTCGCATTTGACCAAAAAACCTGGGAACATTTTTCTGTaggttcttttttatttttgccaaacAAAAATCTATCTTCTTTCTGAGGCAATTGTGGTATGTTTTTTGTAACAACTAAAAAAAGAACATACATATAATGTTCAGGTATGGTTAACATATATTTTGGGGACTAATAAATTGTTAGCTGGGTTGATGTATTTATTGTTTGGCTGTTAGCATTTTAgcatcttatttattattttaaaaaaggtatttttaaTTCAAGATATGCAGCACAGTAGTTTGTTGAGGGGAATTAAGCATTGTTTTACGTTACCAAATATTGCACCTTTGTGGTGTTTTGAAGGTCTAATGGAAGATTATAAGATTATTTAGGATACAATGATCTGCACCGTAGTTTGGGTTTCATGCAAGTTTGTGTTATCCAAAGTTTACCTCCCTGTGTAAAACTTAACCATTGTTTAACTacaaatgatataaaaaaaacatggttaatCCATggtaaacaacacaaaataaccaTGGGAACTGTGCTATTTGTAAGATGATTTTATAGGTTACTTTTCCTATAAAATCTTGGTTTTAAGGtgtctttttttataaaaattttgtttcattgtttcaaaaaacaataacataaataTGATCATAGAGAGGTGACAATATAAAATAGGCTAGGTGTATAGGCCAAAATCTTATTTAAATCCCCAGCCCATGTTCACGTTTTTAATATAGGAAAGAATAACGTTGTAAGTTGCAATTCAACCGATGGTTTTTGATCAAAGAGACACCGTACAAAGTGATTCAGACTTACACAAACGGAACTGCAACTTTGGCAAATGTTGCAAATGTTTATGTAACCATGTTGAGCCATAGTAAAAGAATGGAATGTTGTTCAACATGACTCTCAGTAAATGTTGCACGCAAATTATAATACACACCAAACCCTAGTCATTTGCATCATCTAGGTGTGTGTTGGTGACTGTCATCTGTTTAAAAAAAGGCCACTTGACTGCATTTCAACAGTGTCTCAGTTTTGTCATTAGTAATGTTTTATATATCTATTAATACAAATGTATGGGTGAATAATCTGTCAAAAAAGAGAACTGACATAtgattacatcaaacattattTTGTGTCATGACAGTAAACAGTTTATGGAAGAA
>TCONS_00020798
TATGAAAGCCAAGgcttacaggtttacagctttcttcaatgTCACTTATTCAgtgttcaaactactaaaaaaataaattaaaaaaaaataaataaatactcaaacaGGTAAAAAGTGAGTACATTAAATGATAACTgaactttaatttttgggtgatctaGCCCTTTAAGTACaggttatacagtatataaacttGTGAAAGTGTAACAATTCACATTTGCAGTATGTGAAATATGTTGATGTAATTAGTGCTTGGTCAGTTCTAGTTAGGCGTTGGTTTTTTCACTCGgcttatagatttttttgttttttgttccagCTTCAGGGGTGTGAACGGCAGCATTGTTTGACTTTATCAGACAACTGAGCTGGTTTATTGGCCTTAAGTGACTTTCAAATCACAGGTGAAATGAAAAGCTGAAAACAGTTTTCTGAGGGCAGCAGACCAATGAGAGAAAGGGGGAGGAGGGTTAGTGAACGGCAGGTGAATTATAAATGATTTCAACACAGGTCATAGTTTAGACTGCGAGAAGCAGCAGTGCATGTGTAGTGGGTAAGAATatagagacaaaaaaaaacacaagattgttttgctggattttttttaagaaacccaAGACTTACCTGCGAGTCTCTGGTTGACATTAACACCTGCTGCAGTGactgaagaATTATACAGGATGGCTGACAGACACTTCTGGTGGAAAAGCTTCACCGGAAGGAACAAGAACAACTGTAAAGAAGCCCAGCAAGAATTTGGAAGTTCGGACAAGACAGTAAAACACACAAATGGCGAGAACAAGACTAACAATCTGATCAGCGACGAGAGGTACGATGACTCTCAGCTGGAGCCTTCCTTCAACGAAAACACGTGCCGGAGACACTTGACTGTTTCCCGCTCTGGCCGATACAAGGAGAAGAGAAGAGCGCGGGTCACCATGCGCGAGCACAACTTCTATGAGACGAGCATTGCTGTCGCAAAGTAGATAAGCAGTTTACaacaataaatgaacaaaacGAACCTGTTTCTAAAGAATTAAGCCGCTACTGTAAGTGTAACGTACGCTTTACCTGGAACGATGCGGCGAGGGCACAGCTTACAGTTTGTTTGGTCTTGTTACGTCATTCGCTTTCAGGACTGAGACAATTTTATGAAGAAAGCCTCATTAAGGTGAAGCCACTTGATTTTCAGTGATGGACAGCACCTGGATATGCTCTAACCTGGATTTGTTTGCTGAAGCCTCTTGGAGATTCAGTTATCAGCGTTGAAATGGAAAGACATATGCACCCAGCAAACACAAAACATTCCCAAAATAGTTCCTATTTGGTTCGCATTTGACCAAAAAACCTGGGAACATTTTTCTGTaggttcttttttatttttgccaaacAAAAATCTATCTTCTTTCTGAGGCAATTGTGGTATGTTTTTTGTAACAACTAAAAAAAGAACATACATATAATGTTCAGGTATGGTTAACATATATTTTGGGGACTAATAAATTGTTAGCTGGGTTGATGTATTTATTGTTTGGCTGTTAGCATTTTAgcatcttatttattattttaaaaaaggtatttttaaTTCAAGATATGCAGCACAGTAGTTTGTTGAGGGGAATTAAGCATTGTTTTACGTTACCAAATATTGCACCTTTGTGGTGTTTTGAAGGTCTAATGGAAGATTATAAGATTATTTAGGATACAATGATCTGCACCGTAGTTTGGGTTTCATGCAAGTTTGTGTTATCCAAAGTTTACCTCCCTGTGTAAAACTTAACCATTGTTTAACTacaaatgatataaaaaaaacatggttaatCCATggtaaacaacacaaaataaccaTGGGAACTGTGCTATTTGTAAGATGATTTTATAGGTTACTTTTCCTATAAAATCTTGGTTTTAAGGtgtctttttttataaaaattttgtttcattgtttcaaaaaacaataacataaataTGATCATAGAGAGGTGACAATATAAAATAGGCTAGGTGTATAGGCCAAAATCTTATTTAAATCCCCAGCCCATGTTCACGTTTTTAATATAGGAAAGAATAACGTTGTAAGTTGCAATTCAACCGATGGTTTTTGATCAAAGAGACACCGTACAAAGTGATTCAGACTTACACAAACGGAACTGCAACTTTGGCAAATGTTGCAAATGTTTATGTAACCATGTTGAGCCATAGTAAAAGAATGGAATGTTGTTCAACATGACTCTCAGTAAATGTTGCACGCAAATTATAATACACACCAAACCCTAGTCATTTGCATCATCTAGGTGTGTGTTGGTGACTGTCATCTGTTTAAAAAAAGGCCACTTGACTGCATTTCAACAGTGTCTCAGTTTTGTCATTAGTAATGTTTTATATATCTATTAATACAAATGTATGGGTGAATAATCTGTCAAAAAAGAGAACTGACATAtgattacatcaaacattattTTGTGTCATGACAGTAAACAGTTTATGGAAGAA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0007275 multicellular organism development biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044420 obsolete extracellular matrix component cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0036379 myofilament cellular_component
GO:0098643 banded collagen fibril cellular_component
GO:0098644 complex of collagen trimers cellular_component
GO:0005576 extracellular region cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0005581 collagen trimer cellular_component
GO:0005583 fibrillar collagen trimer cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0005615 extracellular space cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031672 A band cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0031430 M band cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022144 False 2800 lncRNA 0.34 1 20309370 20312169
TCONS_00020798 True 2493 lncRNA 0.36 2 20309370 20312666

Neighbor

gene id symbol gene type direction distance location
XLOC_010620 plekha8 coding downstream 15134 20265499 ~ 20294236 (-)
XLOC_010619 NA coding downstream 156645 20149577 ~ 20152725 (-)
XLOC_010618 BX511151.1 coding downstream 266094 20041857 ~ 20043276 (-)
XLOC_010617 ahr1a coding downstream 271107 20012190 ~ 20038263 (-)
XLOC_010616 hdac9b coding downstream 303100 19840146 ~ 20006270 (-)
XLOC_010622 chn2 coding upstream 5734 20318400 ~ 20492799 (-)
XLOC_010623 CR354600.1 coding upstream 81027 20393693 ~ 20393809 (-)
XLOC_010624 creb5b coding upstream 216534 20529200 ~ 20707742 (-)
XLOC_010625 tax1bp1b coding upstream 492656 20805322 ~ 20935507 (-)
XLOC_010627 NA coding upstream 610816 20923482 ~ 20927125 (-)
XLOC_010626 CR392024.2 misc upstream 582446 20895112 ~ 20895175 (-)
XLOC_010615 CU855948.1 non-coding downstream 474901 19828376 ~ 19834469 (-)
XLOC_010613 NA non-coding downstream 488058 19807528 ~ 19821312 (-)
XLOC_010630 NA non-coding upstream 766923 21079589 ~ 21083019 (-)
XLOC_010633 NA non-coding upstream 905676 21218342 ~ 21224878 (-)
XLOC_010635 BX469919.1 non-coding upstream 1138489 21451155 ~ 21451284 (-)
XLOC_010614 NA non-coding downstream 495568 19811634 ~ 19813802 (-)

Expression


Co-expression Network