XLOC_010622 (chn2)


Basic Information

Item Value
gene id XLOC_010622
gene name chn2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20318400 ~ 20492799 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020799
atccTGAAGATTATCAGCCACCAATATGGAAGTCCTACTTGTACCAGCTACAGCAGGAAGCACCGAGACCAAAGAGGATCACATGTCCTCAGGAGATGGAAAGCAGACCGAAATACTATGGTAGAGAGTTCCACGGTCTGATTTCCAGAGAGCAAGCAGATGAACTTCTGGCGGGGACAGAAGGTGCTTATCTCATCAGAGAGAGTCAGAGACAGCCAGGAACATACACACTTGCTTTGAGATTTGGAGGCCAAACTCTCAACTACCGACTCTTCTATGATGGAAAGCACTTTGTGGGAGAAAAACGTTTTGAATCGGTTCATGATCTGGTTACGGATGGTCTCATCACTCTCTACATTGAGACAAAGGCCGCGGAGTACATCGCTAAGATGACCACAAACCCCATTTACCAGCACTTGGGCTATACTTCTCTTTTGAGGGACAAAATTACTCACAGACTCAACCGGACCCGATCTGAGCCCAAAAAAGTCACTTTCCAGCAGGATGAGAAGATCAGCCCATCGCCGCTGAGCAGACGGACCACACTCAAAGATGGACCAGAGAAACACTGTAACTATGAGAAGATACACAACTTTAAGGTGCACACGTTCAGGGGGCCGCACTGGTGTGAATACTGCGCTAACTTCATGTGGGGTCTCATCGCTCAGGGCGTCCGTTGTTCAGACTGTGGACTCAATGTGCACAAGCAGTGCTCCAAACTGGTGCCCAGTGACTGTCAGCCAGACCTGCGCAGGATCAAGAAGGTTTTCAGCTGCGATCTCACCACACTGGTCAAAGCACACAACACGCCGAGGCCCATGGTTCTGGACATGTGTATCAGAGAGATCGAACACAGAGGTTTGAAATCAGAGGGTCTGTACAGAGTGTCAGGCTTCACAGAACACATAGAAGATGTCCGACTGTCCTTCGATAGAGATGGTGAGAAGGCAGACATCAGTGCCAACATCTACCCAGACATTAATATAATTGCTGGTGCTCTGAAGCTGTATTTGCGAGATCTGCCCATTCCAGTTATCACATACGACGTCTACTCCAGATTCATCCAAGCAGCGAAAATAACAGACCCTGATTCCAGACTGGAGGCAGTTCACGACGGTCTCCTCCAGCTTCCTCCAGCCCACTATGAGACCCTGCGGTACTTGATGACACACCTGAAGAGAGTCACAATGTACGAGAAGGACAATTACATGAATTCAGAGAACCTCGGAATCGTTTTTGGCCCAACGCTCATGAGGCCACCAGACCTGAACACACTCACCACTCTCAACGACATGAGATACCAAAAACTGATAGTTCAGCTCCTCATCGAGCACGAGGACatcttgttttaa
>TCONS_00020800
CAGTATGGTCAGGTAGACAGGAGGAATGTGCGCGCTCCGGTGACGCGCGTTTGTTTCACTTTAAGAGGCGGATTCGCCTGTGCACACACTGTGTGTTTATTACGAGCCTTGAAGTGGCACATGGAAGCGATACAGTGCAATCACAGACTCTAAATATGGCGAAACCTACAGTCACGGACAGCACGCGGAGCGACGGGGAAGTTTTTTTGTATTCTGCATTTCACAACAGCGAGGAGTAGACGAGTTGTCATATTTTCTGTGCGTATATTTCGGCTCGTATCAACTAGTTTCACCATATGGTTCTTCTGCTGCCACATACGCGCATGTAAATGCGGCAGCGTTGGCGACTCCCCTCTGCTCCGACACTCACAGCTGGGCATTATCGGCTCTTTTGGAGGAACTCTGGAAAGCTGAAGACCGGTAAGGAGAGCAGGGACTGGGATGGAAGAGCTGTCAAGCCCTAACAGACGCAAGTAAGCGGAGAGATTCAGTGAATTAGACGCGATGGCAGCGTCAAGTAACTCCAGTCTGTCGGGCTCCTCTGTCTCTTCGGatccTGAAGATTATCAGCCACCAATATGGAAGTCCTACTTGTACCAGCTACAGCAGGAAGCACCGAGACCAAAGAGGATCACATGTCCTCAGGAGATGGAAAGCAGACCGAAATACTATGGTAGAGAGTTCCACGGTCTGATTTCCAGAGAGCAAGCAGATGAACTTCTGGCGGGGACAGAAGGTGCTTATCTCATCAGAGAGAGTCAGAGACAGCCAGGAACATACACACTTGCTTTGAGATTTGGAGGCCAAACTCTCAACTACCGACTCTTCTATGATGGAAAGCACTTTGTGGGAGAAAAACGTTTTGAATCGGTTCATGATCTGGTTACGGATGGTCTCATCACTCTCTACATTGAGACAAAGGCCGCGGAGTACATCGCTAAGATGACCACAAACCCCATTTACCAGCACTTGGGCTATACTTCTCTTTTGAGGGACAAAATTACTCACAGACTCAACCGGACCCGATCTGAGCCCAAAAAAGTCACTTTCCAGCAGGATGAGAAGATCAGCCCATCGCCGCTGAGCAGACGGACCACACTCAAAGATGGACCAGAGAAACACTGTAACTATGAGAAGATACACAACTTTAAGGTGCACACGTTCAGGGGGCCGCACTGGTGTGAATACTGCGCTAACTTCATGTGGGGTCTCATCGCTCAGGGCGTCCGTTGTTCAGACTGTGGACTCAATGTGCACAAGCAGTGCTCCAAACTGGTGCCCAGTGACTGTCAGCCAGACCTGCGCAGGATCAAGAAGGTTTTCAGCTGCGATCTCACCACACTGGTCAAAGCACACAACACGCCGAGGCCCATGGTTCTGGACATGTGTATCAGAGAGATCGAACACAGAGGTTTGAAATCAGAGGGTCTGTACAGAGTGTCAGGCTTCACAGAACACATAGAAGATGTCCGACTGTCCTTCGATAGAGATGGTGAGAAGGCAGACATCAGTGCCAACATCTACCCAGACATTAATATAATTGCTGGTGCTCTGAAGCTGTATTTGCGAGATCTGCCCATTCCAGTTATCACATACGACGTCTACTCCAGATTCATCCAAGCAGCGAAAATAACAGACCCTGATTCCAGACTGGAGGCAGTTCACGACGGTCTCCTCCAGCTTCCTCCAGCCCACTATGAGACCCTGCGGTACTTGATGACACACCTGAAGAGAGTCACAATGTACGAGAAGGACAATTACATGAATTCAGAGAACCTCGGAATCGTTTTTGGCCCAACGCTCATGAGGCCACCAGACCTGAACACACTCACCACTCTCAACGACATGAGATACCAAAAACTGATAGTTCAGCTCCTCATCGAGCACGAGGACatcttgttttaa
>TCONS_00020801
CACTGCAGGACAAACTCAGCTGCTGCTTTCATTCCACATCATACTCATCCTCCTCCACAGAGGAGATGCAGGCTCTTCCCAAAGCCAGAGCCCAAGTTGGTGGCATTATGGGGTCGGCAGTAGGTGAATTAGCCCCCCACAAAGCCAAGCAGAAGGAGCGCAAGCACCAGGAGTTGTTGGCATTGGCTCTGGGCGTGAATCTGGGCAGCAGGGGTGCTCTTCTCTGGAAACCTCTAAAGATTTTGGCTTGTTCACAGATCAGCCCATCGCCGCTGAGCAGACGGACCACACTCAAAGATGGACCAGAGAAACACTGTAACTATGAGAAGATACACAACTTTAAGGTGCACACGTTCAGGGGGCCGCACTGGTGTGAATACTGCGCTAACTTCATGTGGGGTCTCATCGCTCAGGGCGTCCGTTGTTCAGACTGTGGACTCAATGTGCACAAGCAGTGCTCCAAACTGGTGCCCAGTGACTGTCAGCCAGACCTGCGCAGGATCAAGAAGGTTTTCAGCTGCGATCTCACCACACTGGTCAAAGCACACAACACGCCGAGGCCCATGGTTCTGGACATGTGTATCAGAGAGATCGAACACAGAGGTACTGAA
>TCONS_00020803
GAGCCTTGAAGTGGCACATGGAAGCGATACAGTGCAATCACAGACTCTAAATATGGCGAAACCTACAGTCACGGACAGCACGCGGAGCGACGGGGAAGTTTTTTTGTATTCTGCATTTCACAACAGCGAGGAGTAGACGAGTTGTCATATTTTCTGTGCGTATATTTCGGCTCGTATCAACTAGTTTCACCATATGGTTCTTCTGCTGCCACATACGCGCATGTAAATGCGGCAGCGTTGGCGACTCCCCTCTGCTCCGACACTCACAGCTGGGCATTATCGGCTCTTTTGGAGGAACTCTGGAAAGCTGAAGACCGGTAAGGAGAGCAGGGACTGGGATGGAAGAGCTGTCAAGCCCTAACAGACGCAAGTAAGCGGAGAGATTCAGTGAATTAGACGCGATGGCAGCGTCAAGTAACTCCAGTCTGTCGGGCTCCTCTGTCTCTTCGGTGTACCAGCTACAGCAGGAAGCACCGAGACCAAAGAGGATCACATGTCCTCAGGAGATGGAAAGCAGACCGAAATACTATGGTAGAGAGTTCCACGGTCTGATTTCCAGAGAGCAAGCAGATGAACTTCTGGCGGGGACAGAAGGTGCTTATCTCATCAGAGAGAGTCAGAGACAGCCAGGAACATACACACTTGCTTTGAGATTTGGAGGCCAAACTCTCAACTACCGACTCTTCTATGATGGAAAGCAC

Function

symbol description
chn2 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of GTPase activity. Predicted to act upstream of or within intracellular signal transduction; positive regulation of GTPase activity; and regulation of small GTPase mediated signal transduction. Orthologous to human CHN2 (chimerin 2).

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0051056 regulation of small GTPase mediated signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005096 GTPase activator activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091020-5 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of GTPase activity. Predicted to act upstream of or within intracellular signal transduction; positive regulation of GTPase activity; and regulation of small GTPase mediated signal transduction. Orthologous to human CHN2 (chimerin 2).

Ensembl:

ensembl_id ENSDARG00000011845

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020799 False 1352 mRNA 0.49 12 20318400 20435475
TCONS_00020800 False 1905 mRNA 0.49 13 20318400 20492799
TCONS_00020801 False 611 lncRNA 0.53 3 20328038 20371666
TCONS_00020803 True 701 processed_transcript 0.50 5 20402220 20492696

Neighbor

gene id symbol gene type direction distance location
XLOC_010621 NA coding downstream 5734 20309370 ~ 20312666 (-)
XLOC_010620 plekha8 coding downstream 24164 20265499 ~ 20294236 (-)
XLOC_010619 NA coding downstream 165675 20149577 ~ 20152725 (-)
XLOC_010618 BX511151.1 coding downstream 275124 20041857 ~ 20043276 (-)
XLOC_010617 ahr1a coding downstream 280137 20012190 ~ 20038263 (-)
XLOC_010624 creb5b coding upstream 36401 20529200 ~ 20707742 (-)
XLOC_010625 tax1bp1b coding upstream 312523 20805322 ~ 20935507 (-)
XLOC_010627 NA coding upstream 430683 20923482 ~ 20927125 (-)
XLOC_010628 snx10b coding upstream 540834 21033633 ~ 21038015 (-)
XLOC_010629 cbx3b coding upstream 545721 21038520 ~ 21047872 (-)
XLOC_010626 CR392024.2 misc upstream 402313 20895112 ~ 20895175 (-)
XLOC_010615 CU855948.1 non-coding downstream 483931 19828376 ~ 19834469 (-)
XLOC_010613 NA non-coding downstream 497088 19807528 ~ 19821312 (-)
XLOC_010630 NA non-coding upstream 586790 21079589 ~ 21083019 (-)
XLOC_010633 NA non-coding upstream 725543 21218342 ~ 21224878 (-)
XLOC_010635 BX469919.1 non-coding upstream 958356 21451155 ~ 21451284 (-)
XLOC_010643 FP015862.3 non-coding upstream 1307586 21800385 ~ 21803111 (-)

Expression


Co-expression Network