XLOC_010627


Basic Information

Item Value
gene id XLOC_010627
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 20923482 ~ 20927125 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022145
CTCCTCCAAGTCTTGCAAATTCGCCGCTCTCAAATTTGTGACTCAAGGAAGATATAATGAAATATCGTGccgggttaaaaaaaaaactattttgctgATTACGGCCGTATGGGGACCGCGGTGCCATTAAACTATTGCTTTCATGGAGACAAGGTTGAAATTGGACCGTATTGCTTGTCACATGATTACCTCTGTCCAATGACAATTTGGGGTTTAATCAAAAGAAGCCACTGTCTGTGTGATTGATCGAAAAAAGTCCGAGAGGAACGCCTCACTCTCTGGGACGGGCTAGTTTATTTACGCATTTATGGTCAGTTTGCCCGCTGCTCGCTCCGTAGATTACATGTATAGCCAGTACCTGAAAAGAGTGACAGTGAGTCCGTCTGCTGTTTTCTTCATATTTAACGGTCCTCGGCAGGAGATCCCACAACACATCAACTGTTCACATAAAACACACCAATAGCTACGATCGAGGAATCCCATTAATCCCGAGTCTGGGTTTTTACTACTTTCTTAGGCAATGCGCGCTCCCTCTTGTAAATGCACGAGCAAAAGCGCGTGAGAGATTAAGCGCGCACACATTGCGCGTAGACAAATTCTTTCAAAGCCTTGACGCGCTCGCGTTCACACGCGCACTGACGCGTTATACTTAAATGTATTACTTCTTTATATTTATTGCTTATTATTTAGATATTGTAAGTTTTAAAAACCTGAGTTTTATTCGTAGATAGTTTCTGTATGTTATACATTTAATCTCTATACCGTTATTAAACTTAAATGTTGATATCCAATGTAGAATTTAAGAAAACATAAGGTCATCAAAAGGGaaaataatatatcaaatataaaacgtttaaataatataattgtgtTTATTGTAAATGAGGCTGTGCATATTTTATTTGAACTGATTACAATTAGCCTTCAACAGTGTCACTGGCAAACACATTAAGTTTTTAatgtgagataaaaaaaaaaatcaaatagttATTTGTATGTTCAAGAATGTGTCTTCTGTGTTGCCCTTAGTCGTCTTTAGCTAAGTAGGTGTAGGCCTCGAGCACTTTATTGCTTATATTCCAAACAAAGAGCCCTGGAAGCCTGCACGCTATCAATCTTACACGCCAAAAGGTCTGACAGCTTAGTGCCCTAAGAACACATTTAAACCATCTAACACTCCCTTAGATCATATGTGGCCAGGAAGAAGAGAACAACGTACTCATGGTTAAGAGTTTgttcattttatacattttatatttagaaGTGATATTTCTCGATTATGGGATTGACCTTGATCATAATTTCATATCGGATGTGCTTCGAAAGGAGGATTTTCTCGGACCAAACATTATTTGTGTTATATTTTCGTTTTTTGGAAAGTCAGCCTTTATCGAAGGGTTGGGAATAAATAGGATTATATATTGATTGTAAGAGGAAAAACGTGTTTTTGTCAGCTACACAGGAGCTATTGTGTAAAGAAGAACGTGGGTGTCGGCATTCTTTAAAAATGCCTACTACTTCCTACACATTTCTACTACGAACgaaaaatcatctttttttttcccacGAACTGAACATCGAAATCAAACAAGGATGTATCTTTACATGTACTGTTAAATGttatattagttatttattaatctatacgttaaaatattgaataatatgtaTAATGCATTGTATGTATTCTAATCAGATATGTTTTTTTTGGATATGTAAATTATATTGCAGTGTTTtgaattaaacttttttattttatggaaAATTGCAGTTGAGCTGTACATTCCCGACGACGTTGCAAATGTATGAATGCATGCACATGAATGCAAAATGTATTCGAGTTCATGTTCTGATATTACagaatctgaattgtgtttttatgtttgtcaAATTGTGGATAATTGTCAAGAGTGTATTGGATGTTTTCCTATGTTAAAGTAACATTTACAAGggcgttttaattttttttcggtTGTTGTCAGTCACCTTGATTTAAATTAATGCAGGTCGAATATAAGCAAAAGTCTGTACAATCAGTGTGTgtataaagaaaaacattttgacattttaatgcGCGAGTAAATAGTACAAGAAAGAAAAACATCTTCAATTTTAAAAGTGGCGTTTAAGGACAAGTCGGGATACACTAaggaaatatttagttttaagttATGAATTTAATAATTATCTCATTATTTGGCAATTTTGCAGCTTTTTCTTCCACGTGCTGAGTAGGTGTTCCAGCATTTTTTGGGGTGCGTCTGGCACAACAGACAGCCCCGCTGACCgtctgttaaaataaataatgaattctgACGGTCTTAAAACGCAAGTTAAAAGTGAAAACTTGGCCTGTCGAATCGGCAAACAAATGAAGCGATCAATGTGCTACATTGAAAGCGAACGCATTAATTGGTGCAGTATATGCTATAGGCTACATTATATAGATAAGTATAAACGTATTAAGTTTATTACGCATCAAGTCTTCTACTACTTTTACATTAAGCCATATTACTTattatgctaataataataataatagacctAATAGtggaataatataaaataaatagaaatctgTTTAATAATACCCTAAtagtaacaatataataataataataacaacaacaacaacaataataataattattattattattaatattactttttattattatcaatattactaTCAGCCTTtattgtcatcattaatattagtGTTAATAGCAATGTACTGCGTTTCATTTTATGAATTAAAATTACCCCAGTTTGTaagactgttttttttctttcgaattgtaattagattttttctcttTGTAGTCGTCTTTTTATTTGTAGAcgaattaattagtttttttttttttgtttgttaataaaaTTCAGATGCTTTACTTGCATTCAGATACCTGTTTAATACCCTATTACATCTGATGATCGAATAAAGTTAGGATTGCTAACTCAATTATTCCACAATATCTCTCCAAATAGCTAATGCATTATGTACATGATATATGTTCAGCTGAAAGATCATCGTCTTAGAATACTGTGAATACTTTCTGAAGCCATTCGTTTGTGTAAAAAAGCCAGGATTGATCAGTGTGTATCCCTCACAGTGTGCTTTGTAAATTAGTGCGAGGCGTATATGGGGTGTTTATGATGTCTGCGAAGGCAGCAGCGGCAGTAGCTCTTGCAACAGTGGCGTTTGATGGATGACCCTCTACCCACACACATTGCACTCGGTCGTAAACGAGATCCAAGCTTCTTTTGTTGTTCTGGAGGTGTATGTCATTTCCGGGCATATGCACTATACTCCTGCTCGAGAGGAGAATTATGCAGAATTATGCAGGATATGACGTTCTGAGAAAATATCCCTTGACTTGCCTGGTGTTAAcacaaatgtaataatttattgtttaacCTCTTGATGCTGAAACATGTAATTAAAACAGGATAACTTGGTAAGTCAACAACCAGTGTCTAGGGTATTGTAAAGGATTGGACTTACAATTCTTTGTAGGGATGCCATATAAATCGTATTTTTTTTGGTTAGGCTACTGTACATTTAAGAACCCATCAATCAGTTTTGTATTCTATTTGACACGcaacaataatttaaaacaataaatggtAATATGTTC

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0048468 cell development biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006935 chemotaxis biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0000902 cell morphogenesis biological_process
GO:0000904 cell morphogenesis involved in differentiation biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0030182 neuron differentiation biological_process
GO:0001501 skeletal system development biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0019857 5-methylcytosine metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0120039 plasma membrane bounded cell projection morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048858 cell projection morphogenesis biological_process
GO:0048589 developmental growth biological_process
GO:0048592 eye morphogenesis biological_process
GO:0048593 camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0032990 cell part morphogenesis biological_process
GO:0048880 sensory system development biological_process
GO:0008283 cell population proliferation biological_process
GO:0040007 growth biological_process
GO:0006211 5-methylcytosine catabolic process biological_process
GO:0097485 neuron projection guidance biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0061564 axon development biological_process
GO:0048666 neuron development biological_process
GO:0048667 cell morphogenesis involved in neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0007409 axonogenesis biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process
GO:0007417 central nervous system development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0031175 neuron projection development biological_process
GO:0048705 skeletal system morphogenesis biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0009790 embryo development biological_process
GO:0005853 eukaryotic translation elongation factor 1 complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0070579 methylcytosine dioxygenase activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022145 True 3644 lncRNA 0.34 1 20923482 20927125

Neighbor

gene id symbol gene type direction distance location
XLOC_010624 creb5b coding downstream 215740 20529200 ~ 20707742 (-)
XLOC_010622 chn2 coding downstream 430683 20318400 ~ 20492799 (-)
XLOC_010623 CR354600.1 coding downstream 529673 20393693 ~ 20393809 (-)
XLOC_010621 NA coding downstream 610816 20309370 ~ 20312666 (-)
XLOC_010620 plekha8 coding downstream 629246 20265499 ~ 20294236 (-)
XLOC_010628 snx10b coding upstream 106508 21033633 ~ 21038015 (-)
XLOC_010629 cbx3b coding upstream 111395 21038520 ~ 21047872 (-)
XLOC_010630 NA coding upstream 152464 21079589 ~ 21083019 (-)
XLOC_010631 si:dkey-271j15.3 coding upstream 203890 21131015 ~ 21140098 (-)
XLOC_010632 pde11al coding upstream 217544 21144669 ~ 21185778 (-)
XLOC_010626 CR392024.2 misc downstream 28307 20895112 ~ 20895175 (-)
XLOC_010619 NA non-coding downstream 770757 20149577 ~ 20152725 (-)
XLOC_010618 BX511151.1 non-coding downstream 880206 20041857 ~ 20043276 (-)
XLOC_010615 CU855948.1 non-coding downstream 1089013 19828376 ~ 19834469 (-)
XLOC_010633 NA non-coding upstream 291217 21218342 ~ 21224878 (-)
XLOC_010635 BX469919.1 non-coding upstream 524030 21451155 ~ 21451284 (-)
XLOC_010643 FP015862.3 non-coding upstream 873260 21800385 ~ 21803111 (-)
XLOC_010645 FP015862.1 non-coding upstream 895609 21822734 ~ 21823249 (-)

Expression


Co-expression Network