XLOC_010628 (snx10b)


Basic Information

Item Value
gene id XLOC_010628
gene name snx10b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21033633 ~ 21038015 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020814
CTTGCTGTTGTGTGTCACTGTCCAATAAAAGTTAGTGAGTGAGTGTATTCGTTTGCTCTTTTCCATAATTCTTGGACTTATGCAGGAATTCACTGGCGTTTGGGTGAGGGATCCTCGCATCCAGAAGGAAGATTTCTGGCATGCCTTCATGGATTATGAAGTTTGTATACATACAAACAGCTTGGCGTTCACTAAGAAGAGCTCCTGTGTGCGGCGGAGATTCAGCGAGTTTGTGTGGTTAAGAAAAAAGCTACAGGAAAATGCCTTGCTCATAACACATATACCTAAACTTCCTCCAAAAAACCCCTTCTTCAGTCtcaacaatgcaaaagaaattggAGCCCGTATGGAGGGGTTAAGGAAATTCCTAGAAGCGGTGGTTCACAGTGCGGTTCTGCTGTCAGACAGTTGCTTGCACCTCTTCCTACAGTCCCAACTAAGTCTGAAAAAAATTGAGGCCTGTGCTGAAGGCAGGACTCGCTACACTGTATCCGAGGCCATTCACAGTTTCAGTTCTGGACACAAACGCTTTGATTCACTGTGTGAAGAGAACATGGAAGAAGAGCAATGTGTGCAATGTGAATCAGAGTGATTATTTTTGGACAATAAAATGGAGTCAACGCACATTATGCTTTTAGATATAAAAATACAACCTCTGTCACTGTTGTTATGCCTTTTTAAAAAGATAGTTTGTACTGTTTAAGGTAGGACTACCAAAATGTACACTTTAGGGAATATATACGTAGGCCTACCCAACGTGCCAGTTATAGACCCTCATTTTAAAAAACGAACAAACAATCGGGTAGGTTTATTTTTGAAAAAGTCCATACCCTACTATGTCAATGACATCTTTTGTACCTTTTTGAGAGTACAATTTCGCAATAACATTGATGACATATTGAACTCTGAAGATTACAACCCATGTTTGAATAGGAacacttaaacatttaaaaagttagCTATTTTCTCGCACTGACTTCTGTACCGACAAATGAAGACtaataaattgaattatttaaacacatttgtgcACACATTAATGTCCTGCCTGGCTTTCAAAGGAAAGTATAAAAGCATAATGTGGCCTGTGAGGAAGATAGTTTGTTGTTAAAACTACAGATGAGCGTTGAGAGGTTTACGAGAGGGAATTTATGTTTGTGTACGAAGTCCCTTAAACGCAATAACCCCATCCTAATAAGCAAATACAGAGCATTAGGACATTAGCCTATACGTGATTTAAACCCGACTTCACCGAGCTAAATCCTAATAATAATCTCTACTCAAACAATTTTATTGCCGTACTTAACCATAAAAGATCATTGTCAGGATGCCATACAGATCCTTCTCATAAATATTTAACACTCTTGTGTGAGGCCCAATTTGACCAACAGATGGCGCCTTTGCTCTTCTGTCTTTCCATGACTGACCCTCTAAACCCTGCAAAACCATAAACATTTCATCACAGTCAAAATGCCCTCTAGGCAAGCAGTGTTTTTACTTTTTCAAATGAATGTGACATTAAATCAATACATTTTAGATCAGAAGGTAGCCTACTGGTCGCCAAAAGCAAGCGGTAAGACCATCAAAGTAAAGGATGCAAGCAATCAGTAAACAAAATTACACCAGAAATCATATGCACgcataatacttattattaagaAGTCAGATTAGGCGGGTTAATATGTTTAGTCAAAGACAGGTAGGGTACAATATATAATGAGATTAGCCTATATGTACAATTTTCTGACATATATtatcaaataaattcaaatagACTTAGACCAACAAGTTGAATTATACTGGTTAAAGAGCCAAATATACCTTTAGAGCGTCACCTGAACTCTTGATCGTATGCGCAGCAGGTCTTGAAAAATAAATCCAAATCTAACGATACTTTGTATTATCATGTGTTCAAGAACTGCAATTTATCAAACAATTTCTAAACTGAGGAGGATGATCTTAAGacaattccaccaatcagagagcgtTATTGGGAAACACGCGCAAAAAGATATAGTTAGCCACGCCCACTACCATAGAGTACCTGCAAATATGACCTAATTTGGGCAATCATTTAAACGCTGTTAATATGATATGCTTCttaggtatgtatgtatgtctggatggatagatagagaccccaacctaacagtctatatctaatgagaattagttggcatgtagatgcaatgtaacgtaAATTCAAcatatggaccatcaaaataaagtgtaaccctgAAA

Function

symbol description
snx10b Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in endosome membrane. Human ortholog(s) of this gene implicated in autosomal recessive osteopetrosis 8. Orthologous to human SNX10 (sorting nexin 10).

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005768 endosome cellular_component
GO:0010008 endosome membrane cellular_component
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0035091 phosphatidylinositol binding molecular_function
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070628-1 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in endosome membrane. Human ortholog(s) of this gene implicated in autosomal recessive osteopetrosis 8. Orthologous to human SNX10 (sorting nexin 10).

Ensembl:

ensembl_id ENSDARG00000040474

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020814 True 2241 mRNA 0.38 4 21033633 21038015

Neighbor

gene id symbol gene type direction distance location
XLOC_010625 tax1bp1b coding downstream 98126 20805322 ~ 20935507 (-)
XLOC_010627 NA coding downstream 106508 20923482 ~ 20927125 (-)
XLOC_010624 creb5b coding downstream 325891 20529200 ~ 20707742 (-)
XLOC_010622 chn2 coding downstream 540834 20318400 ~ 20492799 (-)
XLOC_010623 CR354600.1 coding downstream 639824 20393693 ~ 20393809 (-)
XLOC_010629 cbx3b coding upstream 505 21038520 ~ 21047872 (-)
XLOC_010630 NA coding upstream 41574 21079589 ~ 21083019 (-)
XLOC_010631 si:dkey-271j15.3 coding upstream 93000 21131015 ~ 21140098 (-)
XLOC_010632 pde11al coding upstream 106654 21144669 ~ 21185778 (-)
XLOC_010633 NA coding upstream 180327 21218342 ~ 21224878 (-)
XLOC_010626 CR392024.2 misc downstream 138458 20895112 ~ 20895175 (-)
XLOC_010621 NA non-coding downstream 720967 20309370 ~ 20312666 (-)
XLOC_010619 NA non-coding downstream 880908 20149577 ~ 20152725 (-)
XLOC_010618 BX511151.1 non-coding downstream 990357 20041857 ~ 20043276 (-)
XLOC_010635 BX469919.1 non-coding upstream 413140 21451155 ~ 21451284 (-)
XLOC_010643 FP015862.3 non-coding upstream 762370 21800385 ~ 21803111 (-)
XLOC_010645 FP015862.1 non-coding upstream 784719 21822734 ~ 21823249 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000016_08374296_08376159 SNX10B coding CI01000016 null 8374250 ~ 8376159 (-)