XLOC_010629 (cbx3b)


Basic Information

Item Value
gene id XLOC_010629
gene name cbx3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21038520 ~ 21047872 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020815
CCCAATCGGCCATGTTTAATTTGACTCATTCATGAAAAGTTATGTAAACACAACAGTAACGCAATGATCGCGAAGGCGACATAGTTAACGATGCTAGATTAAGTGATCTGCGTTGTGATCTTCCGTCTAAATGAACCGCGTTGTTTGTACAGAGCGATCATTTGTTCGAGCATTAATCAACAGCTGAGGAAATAAACGAATAGCGCGTGAACTGCGGGCAACGGCAGGAAACCATGAGGAAAAAACAGAATGTAAAAAACAGGAAAGCAGAAGAGACGACAGTTGTTCAGGAGTTTGCAGTGGAAAAAATAATTCGCAGAAGAGTCAACAACGGAAAGGTTGAATATTATCTGAAGTGGAAAGGATTTACAGAtgCAGAGAATACCTGGGAGCCAGAGGATAACCTGGATTGTCCTGAGCTGATAGAAGAGTATCTCAGAAACCTAACTGTATTGGGACAGGAAACGGAACAAGAGGAGTGTCAATCTCTAGATCACGAAGTTCAGCCTAAGGAAGAGTTATCAGAGTTGGCTGCTGATATGGCTCACCAGCAGCCTCAGGAGGAGCTCATTGAAAGGACTAATGAGGAGGTTGAAGAACACAACGCTGAGATCCCAGTAGGCCAACCCGGCCACCCTGAGCCAGACTGCATCATCGGCTGCACAGACCAGCAAGGAGAGCTCATGTTTCTTATCAAGTGGAAAAACACGGATGAGGTAGCTTTACTAGCAGCCGTGGAGGCCAGTAAAAGGTGGCCCCAGATGGTAATCCGCTTTTACGAGGACAAGCTGACCTGGCATGGAGACGACGAGCAGTGAAAGAGAAAATATGTAGCAGTGGATACTACTGTACCTCCTGGCAgctttaaacacacaaacactgtggCTTAAGTTTACTGTCCGTTTACTGTACCGTGTAATAAAGTGTGCAAAGCCACACTCTAATGTGAAGCTCTTcctaacacacttacctgtagaaaTGTGACTGGAGTATTAGAACCTACTGTAGTGTTCTGTTTGTACAAATCCACACAAGTGGTTTATTAATCAGTCCAATGTTGTCGTATTTCTTGGTCTGTTGTTTGAGAACTCGTTTATGATGTCCATCATTCTGTCCTCCATTGTTATGATCTGAACTGTGATTTAACATAGGAAGTGATGACAGATGGTACAGTACCTGTTAGAGAGGAACTGTTTGACTAGTACTATCTGTGCTGTAAACTCACTGTTAAGCACTTATGGCCTATTCACACCAAGAACGACTATAAGAATAACAGTTCATATAgagattgtttttaattgtttatcttTAGTTCACACCAAAAATATGACACGTTAAGTTTTTgaaatcacttttaaaatggtaGTTAAACAAAAAACAGACAAGTACAGCTGCTTTAAAGCAATACTACAAGTTTTTTGAAAATAGACTAATTTTACAATTCCCTTAAAGTAAACTGTTGGaagcacttttagtttagcttagcatagatcactgaaaTGGATCAGACCATTAGCTTATTtcttaaaaagagttttgaattttttctatttaaagcttaactCTTCTTGCCGAAGAACCAACGAAAAATGAAATGTTGCTATTTTgctaaaatctaaaaacatttgAGTGAGCTGCCTAATCTGACTCTATGATCTAAGCTAAGCAATGCTAAAAATGCTCTTATTAGACCCGGAGATTAGGAGAGCCATGTAATAATATAACTTAGCAGTCAGATTCTGCAAACAaaagatgttttttgttttttaataataacttaaCAGATTATGTTTTTggaatagtttttaaaactgtattgtaACAATAAACAGCTAAGCATCtgctttaaaggaacacttcaaGTTTTTTGAAAATAGCCTcatggaagcacttttagcttagcttagcttagcatagatcattaaaatagattacACCGTTTAGCTTTTTTTGTAATAACAGACGGATACTCATAACACTGTGCAGAAAATGTCACAAATCAAAGATTTGATGTTAAATCTTTAGCCCTGCTCACTCATAAAGCACTGTGGATTACATTTTTGTGAGTTTCTCTCTGAATATATTTAAAACCAAAAATTTAAATGTCCTTGTCCTTTGCATTTCTTCAGTTGAGCCATTTGCAATACTTCATGGTATTGTGACTTTTCTTTTTTGAATCCACACTTTCCAATTTTCATGGAAAttttttgcttcaaatcaaagttttaaatattgtaattcaCCTCATATCTGGTTGGTGCGTTTCGTGTCTTCTAATGCTTTAAAGCCTTTTAACAAATCCTTATGGGCAAAATATTTCCTGAACCAGCATTTATGTGCATCATTATAGTTTTGTTCTTGGTGTAAACAggccattttaaaagttataCTGTGATAAATCCTTTGATCTGTGAGCGAGTATTGTGACTCATAAATCGGTAGATTTGCACAAAACTAATTCTAGAATGTAGCCTGTACAATCACACTTTAtttgtgacatttttatttttggtcagTTTCACTTTCATAACAGCAGTATGATTAGGCCATTTACTGTAGGCTGAGGTTTTGCTGAAGTCCTTTGTCTTGCTGTTTCACTTTTCTAAGTTCCTTTTTTCTGTAAAGATCACTGTAACATTAAATCTCTAGGTGCTTTAAATAAACATAGACTTACCTCA
>TCONS_00020816
AGCTACGTATTGTTGGCAGTGTTTATGAGAGGAATTCCTGGAAACCATGAGGAAAAAACAGAATGTAAAAAACAGGAAAGCAGAAGAGACGACAGTTGTTCAGGAGTTTGCAGTGGAAAAAATAATTCGCAGAAGAGTCAACAACGGAAAGGTTGAATATTATCTGAAGTGGAAAGGATTTACAGAtgCAGAGAATACCTGGGAGCCAGAGGATAACCTGGATTGTCCTGAGCTGATAGAAGAGTATCTCAGAAACCTAACTGTATTGGGACAGGAAACGGAACAAGAGGAGTGTCAATCTCTAGATCACGAAGTTCAGCCTAAGGAAGAGTTATCAGAGTTGGCTGCTGATATGGCTCACCAGCAGCCTCAGGAGGAGCTCATTGAAAGGACTAATGAGGAGGTTGAAGAACACAACGCTGAGATCCCAGTAGGCCAACCCGGCCACCCTGAGCCAGACTGCATCATCGGCTGCACAGACCAGCAAGGAGAGCTCATGTTTCTTATCAAGTGGAAAAACACGGATGAGGTAGCTTTACTAGCAGCCGTGGAGGCCAGTAAAAGGTGGCCCCAGATGGTAATCCGCTTTTACGAGGACAAGCTGACCTGGCATGGAGACGACGAGCAGTGAAAGAGAAAATATGTAGCAGTGGATACTACTGTACCTCCTGGCAgctttaaacacacaaacactgtggCTTAAGTTTACTGTCCGTTTACTGTACCGTGTAATAAAGTGTGCAAAGCCACACTCTAA
>TCONS_00020817
AGTTACAGTAGTGTAGAGTTTTATTACTCCAGAGCCTGTCCAAAAGCTGCAGGTTTATTACTCTTGCCATGTGATTTATAATTCATCTCTCTTCTCAAGTTTTCTGAAGTTCATTTCTCTGTGTGGAATCATGCAGGCTCACCAGCAGCCTCAGGAGGAGCTCATTGAAAGGACTAATGAGGAGGTTGAAGAACACAACGCTGAGATCCCAGTAGGCCAACCCGGCCACCCTGAGCCAGACTGCATCATCGGCTGCACAGACCAGCAAGGAGAGCTCATGTTTCTTATCAAGTGGAAAAACACGGATGAGGTAGCTTTACTAGCAGCCGTGGAGGCCAGTAAAAGGTGGCCCCAGATGGTAATCCGCTTTTACGAGGACAAGCTGACCTGGCATGGAGACGACGAGCAGTGAAAGAGAAAATATGTAGCAGTGGATACTACTGTACCTCCTGGCAgctttaaacac

Function

symbol description
cbx3b Predicted to be located in nucleus. Orthologous to human CBX3 (chromobox 3).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-070628-2 Predicted to be located in nucleus. Orthologous to human CBX3 (chromobox 3).

Ensembl:

ensembl_id ENSDARG00000092158

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020815 False 2678 mRNA 0.37 5 21038520 21047872
TCONS_00020816 False 757 mRNA 0.46 5 21040254 21047483
TCONS_00020817 True 466 lncRNA 0.48 2 21040326 21044130

Neighbor

gene id symbol gene type direction distance location
XLOC_010628 snx10b coding downstream 505 21033633 ~ 21038015 (-)
XLOC_010625 tax1bp1b coding downstream 103013 20805322 ~ 20935507 (-)
XLOC_010627 NA coding downstream 111395 20923482 ~ 20927125 (-)
XLOC_010624 creb5b coding downstream 330778 20529200 ~ 20707742 (-)
XLOC_010622 chn2 coding downstream 545721 20318400 ~ 20492799 (-)
XLOC_010630 NA coding upstream 31717 21079589 ~ 21083019 (-)
XLOC_010631 si:dkey-271j15.3 coding upstream 83143 21131015 ~ 21140098 (-)
XLOC_010632 pde11al coding upstream 96797 21144669 ~ 21185778 (-)
XLOC_010633 NA coding upstream 170470 21218342 ~ 21224878 (-)
XLOC_010634 mpp6a coding upstream 394490 21442362 ~ 21489641 (-)
XLOC_010626 CR392024.2 misc downstream 143345 20895112 ~ 20895175 (-)
XLOC_010623 CR354600.1 non-coding downstream 644711 20393693 ~ 20393809 (-)
XLOC_010621 NA non-coding downstream 725854 20309370 ~ 20312666 (-)
XLOC_010619 NA non-coding downstream 885795 20149577 ~ 20152725 (-)
XLOC_010618 BX511151.1 non-coding downstream 995244 20041857 ~ 20043276 (-)
XLOC_010635 BX469919.1 non-coding upstream 403283 21451155 ~ 21451284 (-)
XLOC_010643 FP015862.3 non-coding upstream 752513 21800385 ~ 21803111 (-)
XLOC_010645 FP015862.1 non-coding upstream 774862 21822734 ~ 21823249 (-)

Expression


Co-expression Network