XLOC_010630


Basic Information

Item Value
gene id XLOC_010630
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21079589 ~ 21083019 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022149
GGCGCCGCCGCCTGCTCTGGTTGGCCAACACAACGGGCAAATGGAAAgactttacaaacaaacaaacagacgaTCGACATGGACAACAAACAGGACaaaataatgtatgtatgtgtaagaCCGGTAATGGAGTTATGCTGTGGAAAATGCGTTATGGAAGACTGTCTAGGAGCTATCGGATCTGTGTGTGCACCCACATTGCCAACAGCAGGATAACAGAACAGCTTGTGAAGCCTGAGGGTGAAAGGACTGAAAACAGAGCTTGGCCCTGATTGCTTCTAACACACCGATTTGGGGTTCAAAGCGCACAGCTGTGAGAGAGAAACAGAGCCCTGAGCCTGCAAGGTCAACAGACAGAGGACGAGGGGCTGAGGCACGAAACGATCCATGCCGAGACAACCAGCAGC
>TCONS_00022150
TTGGCCAACACAACGGGCAAATGGAAAgactttacaaacaaacaaacagacgaTCGACATGGACAACAAACAGGACaaaataatgtatgtatgtgtaagaCCGGTAATGGAGTTATGCTGTGGAAAATGCGTTATGGAAGACTGTCTAGGAGCTATCGGATCTGTGTGTGCACCCACATTGCCAACAGCAGGATAACAGCCGGAGAGAGAGAAGAACAACCCATGAAGGCGTTTTCTGATCGAAGCCAAACCACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022149 False 407 lncRNA 0.50 2 21079589 21083019
TCONS_00022150 True 255 lncRNA 0.45 2 21079856 21082999

Neighbor

gene id symbol gene type direction distance location
XLOC_010629 cbx3b coding downstream 31717 21038520 ~ 21047872 (-)
XLOC_010628 snx10b coding downstream 41574 21033633 ~ 21038015 (-)
XLOC_010625 tax1bp1b coding downstream 144082 20805322 ~ 20935507 (-)
XLOC_010627 NA coding downstream 152464 20923482 ~ 20927125 (-)
XLOC_010624 creb5b coding downstream 371847 20529200 ~ 20707742 (-)
XLOC_010631 si:dkey-271j15.3 coding upstream 47996 21131015 ~ 21140098 (-)
XLOC_010632 pde11al coding upstream 61650 21144669 ~ 21185778 (-)
XLOC_010633 NA coding upstream 135323 21218342 ~ 21224878 (-)
XLOC_010634 mpp6a coding upstream 359343 21442362 ~ 21489641 (-)
XLOC_010635 BX469919.1 coding upstream 368136 21451155 ~ 21451284 (-)
XLOC_010626 CR392024.2 misc downstream 184414 20895112 ~ 20895175 (-)
XLOC_010623 CR354600.1 non-coding downstream 685780 20393693 ~ 20393809 (-)
XLOC_010621 NA non-coding downstream 766923 20309370 ~ 20312666 (-)
XLOC_010619 NA non-coding downstream 926864 20149577 ~ 20152725 (-)
XLOC_010618 BX511151.1 non-coding downstream 1036313 20041857 ~ 20043276 (-)
XLOC_010643 FP015862.3 non-coding upstream 717366 21800385 ~ 21803111 (-)
XLOC_010645 FP015862.1 non-coding upstream 739715 21822734 ~ 21823249 (-)
XLOC_010647 NA non-coding upstream 753161 21836180 ~ 21836568 (-)

Expression


Co-expression Network