XLOC_010633


Basic Information

Item Value
gene id XLOC_010633
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21218342 ~ 21224878 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022151
GTCATTCTTCAGCTTCCTGCGTGCAGAGTTGGCACAGATGCTTGGAGAATGAAAGAATGTGTGTTCGCAAATGCTCAAGGACATTGCTGCTGCAAGACATGCTTTTCACTGGTTTGAAAGAGgttcagaagaagaaatattaagAAAAGCATTCTCGGTGAAGCTAAGGTCACTCAGACAActtttaaacagaaatgaaaGAATCGATTCAGAATTCTGTGAACTGACTGCACTTTACAGAGCTACAgAAGCGTACAAGAGGGAGAGGTAGAGCAGATGAAGAGAACCAACTGATTTCGATTCCAgccagtaaatgaatgaatgagAACAGGAGCTGCGGGAATGGAGGACTGTACTGCTGGTGATCGGTATGATGGAAATACAGCAGGATACCGGGCGATGTGGGAGCTGTATGGATGTTCCCGTGGGATATCAACTTTAATCATCTTTGTACTGTAagaacacacacagatacagattATAAATCTCTTGAGCTTTCACTTTGTCCTTGACCCGTCCCTGCCTGACTGCACAGTCAGTTACTCAACAATATGAAAACACCGAAAAGGAGGTGGAAAAAAGCAGACTGAAAAAAAAGGACAGAAATaagaaatatgttttaatattttacctCATATCGATGTCTGTTGGCTTGGGAATCCTTGATAAAAAACATAAaagtagcaaataaataaataatgctaattttATTGACAATGTTTCATTATGAGCTTctgaaaaaaaatacagcttacaGCTGGTCATTCAGTCGGACATTACTCTTCTTAGTTAGTGTAAGGTTGTAATATTGCTCAATGATGACAGACCTGAAAGGAAGCATA
>TCONS_00022152
GTCATTCTTCAGCTTCCTGCGTGCAGAGTTGGCACAGATGCTTGGAGAATGAAAGAATGTGTGTTCGCAAATGCTCAAGGACATTGCTGCTGCAAGACATGCTTTTCACTGGTTTGAAAGAGgttcagaagaagaaatattaagAAAAGCATTCTCGGTGAAGCTAAGGTCACTCAGACAActtttaaacagaaatgaaaGAATCGATTCAGAATTCTGTGAACTGACTGCACTTTACAGAGCTACAgAAGCGTACAAGAGGGAGAGGTAGAGCAGATGAAGAGAACCAACTGATTTCGATTCCAgccagtaaatgaatgaatgaggtaagTCTTTATAATGCATGGGTGACTGCAGGTGCAGGTGCAGGTGATCAGTAATCAGGTGATTGTCCACGGATGTGGTGAGTGGTGGATGGTGAGGGAGAAACGAGCTGAGGGTGTGACAAATATGAATTTACAACTTTTGAATTGTGATGTGTCAAAAGCATGTTCATGTTAGAGAATGCCGATGAGGGAACTGGGGAAACAGCAGTGGGTAGCCTCAGAaagttcactggtttgagccccggctgggtcagttttctgtgcatttctgtgtggagttataagtcaatttggtaagctaaattgtccaaatgtgtgtatgtcctggtcctcgaggttgggggttgagcattgggctgaCGACTTACCTTGTAAAATTAGATGTTATAAAACacaacatggtgcagctaaatatgaACATCgttataaatggccctgggagatTGTAAGCAAGTTATTGTTTTTTGTCTTTACTCAAATTTTTTTAGTTCAGCTTACTTGATC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022151 False 842 lncRNA 0.39 3 21218342 21224878
TCONS_00022152 True 830 lncRNA 0.42 2 21219495 21224878

Neighbor

gene id symbol gene type direction distance location
XLOC_010632 pde11al coding downstream 32564 21144669 ~ 21185778 (-)
XLOC_010631 si:dkey-271j15.3 coding downstream 78244 21131015 ~ 21140098 (-)
XLOC_010630 NA coding downstream 135323 21079589 ~ 21083019 (-)
XLOC_010629 cbx3b coding downstream 170470 21038520 ~ 21047872 (-)
XLOC_010628 snx10b coding downstream 180327 21033633 ~ 21038015 (-)
XLOC_010634 mpp6a coding upstream 217484 21442362 ~ 21489641 (-)
XLOC_010635 BX469919.1 coding upstream 226277 21451155 ~ 21451284 (-)
XLOC_010636 stk31 coding upstream 267013 21491891 ~ 21540077 (-)
XLOC_010637 ddr1 coding upstream 322705 21547583 ~ 21620949 (-)
XLOC_010638 gnl1 coding upstream 426834 21651712 ~ 21668082 (-)
XLOC_010626 CR392024.2 misc downstream 323167 20895112 ~ 20895175 (-)
XLOC_010627 NA non-coding downstream 291217 20923482 ~ 20927125 (-)
XLOC_010623 CR354600.1 non-coding downstream 824533 20393693 ~ 20393809 (-)
XLOC_010621 NA non-coding downstream 905676 20309370 ~ 20312666 (-)
XLOC_010619 NA non-coding downstream 1065617 20149577 ~ 20152725 (-)
XLOC_010643 FP015862.3 non-coding upstream 575507 21800385 ~ 21803111 (-)
XLOC_010645 FP015862.1 non-coding upstream 597856 21822734 ~ 21823249 (-)
XLOC_010647 NA non-coding upstream 611302 21836180 ~ 21836568 (-)
XLOC_010649 NA non-coding upstream 630418 21855296 ~ 21856351 (-)

Expression


Co-expression Network