Fish Transcriptome and Expression Database

Home /
Search /
- Gene
- RNA
- Bioproject
Expression /
Analysis /
- Coding ability prediction
- Expression count
- Visual Omics
Tools /
- Neighbor
- BLAST
Statistics /
Download /
Help

model fish

XLOC_010635 (BX469919.1)

Basic Information

Item	Value
gene id	XLOC_010635
gene name	BX469919.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007127.7
NCBI id	CM002900.2
chromosome length	55266484
location	21451155 ~ 21451284 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020827
TTCATCAACTTATCCAGGAATTCCCAAACTTTTGGTCCtaaagaccggttactcactgaagctaagcagggctgagcctggtcagtactagGATAGGGGACcacatgagaaaactaggttgctgttgtag

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000084040

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00020827	True	130	rRNA	0.46	1	21451155	21451284

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_010633	NA	coding	downstream	226277	21218342 ~ 21224878 (-)
XLOC_010632	pde11al	coding	downstream	265377	21144669 ~ 21185778 (-)
XLOC_010631	si:dkey-271j15.3	coding	downstream	311057	21131015 ~ 21140098 (-)
XLOC_010630	NA	coding	downstream	368136	21079589 ~ 21083019 (-)
XLOC_010629	cbx3b	coding	downstream	403283	21038520 ~ 21047872 (-)
XLOC_010636	stk31	coding	upstream	40607	21491891 ~ 21540077 (-)
XLOC_010637	ddr1	coding	upstream	96299	21547583 ~ 21620949 (-)
XLOC_010638	gnl1	coding	upstream	200428	21651712 ~ 21668082 (-)
XLOC_010639	si:ch211-154o6.2	coding	upstream	222439	21673723 ~ 21692024 (-)
XLOC_010640	cops7a	coding	upstream	300638	21751922 ~ 21777545 (-)
XLOC_010626	CR392024.2	misc	downstream	555980	20895112 ~ 20895175 (-)
XLOC_010627	NA	non-coding	downstream	524030	20923482 ~ 20927125 (-)
XLOC_010623	CR354600.1	non-coding	downstream	1057346	20393693 ~ 20393809 (-)
XLOC_010621	NA	non-coding	downstream	1138489	20309370 ~ 20312666 (-)
XLOC_010643	FP015862.3	non-coding	upstream	349101	21800385 ~ 21803111 (-)
XLOC_010645	FP015862.1	non-coding	upstream	371450	21822734 ~ 21823249 (-)
XLOC_010647	NA	non-coding	upstream	384896	21836180 ~ 21836568 (-)
XLOC_010649	NA	non-coding	upstream	404012	21855296 ~ 21856351 (-)
XLOC_010653	NA	non-coding	upstream	508841	21960125 ~ 21990338 (-)

Expression

Co-expression Network