XLOC_010653


Basic Information

Item Value
gene id XLOC_010653
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 21960125 ~ 21990338 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021802
AATCGCGGGAAAACGTCCCTCATGAAGACTGTGGACGTGACAGTCGCGCTTCAAGCAGTGAAACTCACATCAAACAAtgAATGAATGGTGGTAAGAGTCAAAGCAGAGGATTAAATCCTTTGAAAGATGCTGCTCATCATGTGAGGTTGGGGAAGGATAAAGACATGCTTACGTGGAGGTACATCAGTGACATCAAAGAGTGTGTCATGTGGAGGAGTTGACCTCTCCTGTAACAAACATGAAAAAGCAAAGTCTCTTCATGAGCCATTATCTTTGAATTCTGAACAGAGTGAGCTTCAAAGAGcGCCTCCATGAGCCTGTGGCTTTAACCAACACAAACAgagctgtcttctacagagTACCTCTATGAGCTCGTCACTTTGACAAACACAgagttgtcttctacagagCACCTCCATAAGCCAGTCGCTTTGGCAAACACAgagttgtcttctacagagTACCTCCCTGAGCCCGTCACTTTGACCAACACAgagttgtcttctacagagtaCCTCCATGAGCCAGTCACTTTGtcaaacacaaacagagctgtcttctacagagTACCTATATGATCCCGtcactttgacaaacacaaagacttgtcttctacagagtaCCCCAATGAGCTAAATGCTTCGACAAACACAGAGTTGTCTTCTaaagagTATCCCAATGAGCTCGtcactttgacaaacacaaacagaggtgtcttctacagagCACCTCCATAAGCCAGTCACTTTGTCAAACACAAACAgagttgtcttctacagagtaCACCAATGAGCTAAATGCTTCGACAAACACAGAGTtctcttctacagagCACCTCCATAAGCCAGTCgctttgacaaacacaaacagagctgtcttctacagagGAAATAACAGGTGAATCTTGACAGAAATCCAGGAAGCCAGACAGTGATGGTGGTGATGGCTCTAGCACTGGCAGAACAACCTACATGAGAAGACCATGGACAAAAGCAGACGTGAAGGCTGTAATGAGTTCAAAAGactgattattattatacacattttcatttttttttccttgtcacAGAGTGACAATATTTAACCATTTTCAaacatgtaaatttaaaaaaaaaaacatggcccaGGCCCACTTCTGTTCCATGCCAGTGCTTCACAGTCCATTATCACTCTAGGGTAGTCTCTACATTGCTCTACAGTTTGCCTCTGCTTCTCAACCCATGTCTGCCACTACTCCACAGTCTGGTACTGCTCCACAGTCCAGGTCCACGTCTGCTTCATGAGCCTGGGCAATACCcatcacacaaaaatacataacCCACAAATGCAGTCCCTCAGACTAAACATTTACAACAGTGTTGAGTagcaaaaagacatgttttttgttttttatttacatgtttgaaaATGGTCAAATATTGTCACTgtgacaaaaaagtgaaaatgtgtATGATATTAATTAGTCACTTTATAACACATTATATTACTGTCACATTacgaaatttagtttttaatctgttttgtgtTCATATCATTCTGTATGTATCATTCAATTT

Function

GO:

id name namespace
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0006364 rRNA processing biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021802 True 1556 lncRNA 0.41 17 21960125 21990338

Neighbor

gene id symbol gene type direction distance location
XLOC_010651 setdb1b coding downstream 42764 21891811 ~ 21917361 (-)
XLOC_010650 dicp3.1 coding downstream 72078 21881694 ~ 21888047 (-)
XLOC_010649 NA coding downstream 103774 21855296 ~ 21856351 (-)
XLOC_010648 si:ch73-34h11.1 coding downstream 107043 21851856 ~ 21853082 (-)
XLOC_010647 NA coding downstream 123557 21836180 ~ 21836568 (-)
XLOC_010654 NA coding upstream 18781 22009119 ~ 22012320 (-)
XLOC_010655 si:dkey-71b5.3 coding upstream 25310 22015648 ~ 22022456 (-)
XLOC_010656 CR855277.4 coding upstream 70231 22060569 ~ 22064456 (-)
XLOC_010657 il6r coding upstream 186916 22177254 ~ 22194400 (-)
XLOC_010658 LO017682.1 coding upstream 209172 22199510 ~ 22225295 (-)
XLOC_010626 CR392024.2 misc downstream 1064950 20895112 ~ 20895175 (-)
XLOC_010645 FP015862.1 non-coding downstream 136876 21822734 ~ 21823249 (-)
XLOC_010643 FP015862.3 non-coding downstream 157014 21800385 ~ 21803111 (-)
XLOC_010635 BX469919.1 non-coding downstream 508841 21451155 ~ 21451284 (-)
XLOC_010662 NA non-coding upstream 343954 22334292 ~ 22335517 (-)
XLOC_010663 NA non-coding upstream 372134 22362472 ~ 22368440 (-)
XLOC_010666 NA non-coding upstream 521644 22511982 ~ 22515521 (-)

Expression


Co-expression Network