XLOC_010659 (atp8b2)


Basic Information

Item Value
gene id XLOC_010659
gene name atp8b2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22236961 ~ 22251457 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020867
ATGTTTGTTTTCTTCGCAGAGGAGGAAAGGAGAGTCCGAGCCAATGATAGAGAGTACAATGAAAAATTCCAGTACGCTAGCAACTGCATCATGACCTCAAAGTACAACATTATTACCTTCTTACCAGTCAACCTGTTTGAGCAGTTCCAAGAAGTTGCCAATACCTACTTCCTGTTTCTCCTCATACTGCAGTTGATTCCACAGATTTCCTCATTGTCCTGGTTCACCACCATTGTGCCTTTAGTGCTGGTGCTGAGCATCACTGCAGTTAAAGATGCCACCGATGACTATTTTCGTCACAAGAGTGACAACCAGGTGAATAACCGTCAATCTCAGGTCCTCATCGGTGGCATTCTTCAGAAGGAGAAATGGATGAATGTCAGAGTGGGTGACATCATCAAACTGGAGAACAATCAGTTTGTTGCAgcTGACCTGCTCCTGTTGTCCAGCAGTGAACCTCATGGCCTCTGTTACATTGAAACTGCAGAGCTGGATGGAGAGACGAACATGAAGGTGCGTCAGTCTCTGTCTGTTACCTCAGAGCTGGGAGATCCCAATAATCTGGCCCAGTTTGATGGAGAAGTGGTGTGTGAGCCTCCCAACAACAAGCTGGACCGTTTCTGCGGGACGCTGTACTGGAGAGAGTGTAAATACCCGCTCAGTAACCAGAACATGCTGCTCCGTGGCTGTGTGCTGCGCAACACTGAGAGCTGCTACGGCCTTGTCATATTCGCTGGTCCTGACACCAAACTAATGCAAAACAGCGGACGGACAAAGTTCAAGCGAACAAGTATAGACAGACTGATGAATACACTGGTGTTGTGGATTTTTGGGTTCCTGGTTTGTATGGGAGTGATCTTGGCCATAGGAAATGCAGTTTGGGAGAAGGAAGTTGGTGCTTTGTTCCAAAGTTTTTTACCCTGGGATCCTCCAGTGGACAACTTCCTGTTCTCCGCATTCCTGTCTTTCTGGTCCTACGTCATCATCCTCAACACAGTGGTGCCAATTTCGCTCTATGTCAGTGTGGAGGTGATTCGTCTGGGTCACAGTTACTTCATTAATTGGGACCGGCGGATGTTCTGCAGTCGCAGTAACACGGCAGCAGAGGCCCGGACCACCACACTGAATGAAGAGCTGGGACAGGTGGAGTACATCTTCAGTGACAAGACAGGAACACTCACCCAAAACATCATGACCTTCAACAAGTGCTCCATCAACGGCCACGCATACGGTAAGAAACACAACGTACAAGCAGTTATACTTTGTTCAGATGGTCATTATCACAAAATCACTAGGCTTGTGTCTTTTTGA
>TCONS_00020868
ATGATAGAGAGTACAATGAAAAATTCCACAACTGCATCATGACCTCAAAGTACAACATTATTACCTTCTTACCAGTCAACCTGTTTGAGCAGTTCCAAGAAGTTGCCAATACCTACTTCCTGTTTCTCCTCATACTGCAGTTGATTCCACAGATTTCCTCATTGTCCTGGTTCACCACCATTGTGCCTTTAGTGCTGGTGCTGAGCATCACTGCAGTTAAAGATGCCACCGATGACTATTTTCGTCACAAGAGTGACAACCAGGTGAATAACCGTCAATCTCAGGTCCTCATCGGTGGCATTCTTCAGAAGGAGAAATGGATGAATGTCAGAGTGGGTGACATCATCAAACTGGAGAACAATCAGTTTGTTGCAgcTGACCTGCTCCTGTTGTCCAGCAGTGAACCTCATGGCCTCTGTTACATTGAAACTGCAGAGCTGGATGGAGAGACGAACATGAAGGTGCGTCAGTCTCTGTCTGTTACCTCAGAGCTGGGAGATCCCAATAATCTGGCCCAGTTTGATGGAGAAGTGGTGTGTGAGCCTCCCAACAACAAGCTGGACCGTTTCTGCGGGACGCTGTACTGGAGAGAGTGTAAATACCCGCTCAGTAACCAGAACATGCTGCTCCGTGGCTGTGTGCTGCGCAACACTGAGAGCTGCTACGGCCTTGTCATATTCGCTGGTCCTGACACCAAACTAATGCAAAACAGCGGACGGACAAAGTTCAAGCGAACAAGTATAGACAGACTGATGAATACACTGGTGTTGTGGATTTTTGGGTTCCTGGTTTGTATGGGAGTGATCTTGGCCATAGGAAATGCAGTTTGGGAGAAGGAAGTTGGTGCTTTGTTCCAAAGTTTTTTACCCTGGGATCCTCCAGTGGACAACTTCCTGTTCTCCGCATTCCTGTCTTTCTGGTCCTACGTCATCATCCTCAACACAGTGGTGCCAATTTCGCTCTATGTCAGTGTGGAGGTGATTCGTCTGGGTCACAGTTACTTCATTAATTGGGACCGGCGGATGTTCTGCAGTCGCAGTAACACGGCAGCAGAGGCCCGGACCACCACACTGAATGAAGAGCTGGGACAGGTGGAGTACATCTTCAGTGACAAGACAGGAACACTCACCCAAAACATCATGACCTTCAACAAGTGCTCCATCAACGGCCACGCATACGGTAA

Function

symbol description
atp8b2 Predicted to enable ATP binding activity; ATPase-coupled intramembrane lipid transporter activity; and magnesium ion binding activity. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP8B2 (ATPase phospholipid transporting 8B2).

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2474 Predicted to enable ATP binding activity; ATPase-coupled intramembrane lipid transporter activity; and magnesium ion binding activity. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human ATP8B2 (ATPase phospholipid transporting 8B2).

Ensembl:

ensembl_id ENSDARG00000099216

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020867 False 1311 mRNA 0.48 11 22236961 22251457
TCONS_00020868 True 1183 mRNA 0.48 11 22237037 22251414

Neighbor

gene id symbol gene type direction distance location
XLOC_010658 LO017682.1 coding downstream 11666 22199510 ~ 22225295 (-)
XLOC_010657 il6r coding downstream 42561 22177254 ~ 22194400 (-)
XLOC_010656 CR855277.4 coding downstream 172505 22060569 ~ 22064456 (-)
XLOC_010655 si:dkey-71b5.3 coding downstream 214505 22015648 ~ 22022456 (-)
XLOC_010654 NA coding downstream 224641 22009119 ~ 22012320 (-)
XLOC_010660 aqp10a coding upstream 37320 22288777 ~ 22294265 (-)
XLOC_010661 si:dkey-92i15.4 coding upstream 44205 22295662 ~ 22303130 (-)
XLOC_010662 NA coding upstream 82835 22334292 ~ 22335517 (-)
XLOC_010663 NA coding upstream 111015 22362472 ~ 22368440 (-)
XLOC_010664 tuft1a coding upstream 112243 22363700 ~ 22385705 (-)
XLOC_010626 CR392024.2 misc downstream 1341786 20895112 ~ 20895175 (-)
XLOC_010653 NA non-coding downstream 246623 21960125 ~ 21990338 (-)
XLOC_010649 NA non-coding downstream 380610 21855296 ~ 21856351 (-)
XLOC_010647 NA non-coding downstream 400393 21836180 ~ 21836568 (-)
XLOC_010666 NA non-coding upstream 260525 22511982 ~ 22515521 (-)
XLOC_010675 NA non-coding upstream 643219 22894676 ~ 22989262 (-)
XLOC_010676 NA non-coding upstream 765500 23016957 ~ 23019603 (-)

Expression


Co-expression Network