XLOC_010666


Basic Information

Item Value
gene id XLOC_010666
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22511982 ~ 22515521 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00021804
ATAATGTGCACTTTTCTCTTGTCATCACAGATCCTCCCACCCTTTCTGTGAGTCCTGTTGGCAACAGTGCTGCAAGCCCATCAATGATAACTAATCTGACTGTAGTAGTGATGGCCACAATAATATGTGTGATTCTTTATTTCAAAACCAGAAGGAACAAAACCAAAAGCCAGATTGATCTGAGCTGCCAGTCGTCTGTGTGTTATTCTCAAATTCCAGGAGGGTTTGGTGTCATACAacctgaaaaacatttttaaaaacatgttaactGCACTGTTTACAATTTCCTAtataatctacagtaacttactgtaaacaAATCACAGCAAAGatactgcatttacatttacagcatttaccttactgtatatgtatattcagtattgtaaattttaaaataaactgtaattttcacaatgcaacttaaaaataaaataacatactaTTTAGCTGTCctactgtaaaatacagtttatattacagttaaatactgtggaACTGTTTACAGTGGGTTAAGTTGGGGTACATCACATCAGACGGGTTTGGACTAATTCACATGCTTTGCTAAAGACATCTTGGACACACAACAATTCAAGTCTACATTTAACAGTTGACATAATTTCATTGACTGCATTACATGGTAGGATTGATCTATgtcttgcatttacatttttacgAGTCTTTGTTTGTGATTAAGTACTGTATGCAGATTTCCCTCTTTGAAGAGAGGCCCCTGCACAAAAATAAGATTGCATCCATGATTATAGAATGCtgtgaaatactgtaaaatcactgtattcattgcttgttttatattataaagaATTAGTTTTTTATGCATTGCTTAAAAAATGATTTGAGTTAAGCAATCGGGTACTAGAGGCATGCTAGATTGTGAGTTAGTTCCTTTGAATGATTATTACCTGTCCCAATACCTACACTTGTGGCAATTTACCTGCTTGTCTTGCATGTTGTATTTCTTATTTTTGGCACAGCTGTTCAAATGAATGTGTAGACTGCAAGTGTGTATAAAACCTTTGAGCAACCATTGGAATACATTTATAACAAAGTTTGTAATacagcataaataaaaaattgagcCAAGc
>TCONS_00021805
GTTCTTTATGACTGTCAGGTTTACAAAGATCAGGACTGCCTTAACGCAACTCGATTTATCCTGACAGTCAAAGGTGAAAGTGTCACATTTCAGAAACAAGCAAATGAGCCTCAGGTAACTTGTTGTATTAAACGTGTTTCTCTGGTTTTAGAGTGTAAAAAGTTGCAGTCTGTCTATGCAACACTGGGCTCTTCAGTGCTGCTGCCATGCTCTGAACATCCTCAACAACACACAACTGATCAAGTCACTTGGAAAGTCATCGAAGGTCACCGGTCAACAGATATAACACAATATCACTCTTCATTCAAGACCTCAAACAGCACAGAGAAACTCTCGAAGCCTCTGTTTGAGAGAGCGAGACAACTAAAGAACGGTTTTCTTCTTATAAGAGATTCAGTAAAGGCTGATGAACTGTGGTATCAGTGCACAGTGAATGACACAACCTGCTATGAAGTGAAGCTGCTGATGAAAGATCCTCCCACCCTTTCTGTGAGTCCTGTTGGCAACAGTGCTGCAAGCCCATCAATGATAACTAATCTGACTGTAGTAGTGATGGCCACAATAATATGTGTGATTCTTTATTTCAAAACCAGAAGGAACAAAACCAAAAGCCAGAATGGCAAAATGGTTGTTTTTGTATCTTGTAGTTGATCTGAGCTGCCAGTCGTCTGTGTGTTATTCTCAAATTCCAGGAGGTAAGTGATATTCATGGTAGGTCTTTAGAAATATGTGTACAATGTGTACTTGATCAAGTTTATTGAATAAAATCCTTTTCTTGCAGGGTTTGGTGTCATACAacctgaaaaacatttttaaaaacatgttaactGCACTGTTTACAATTTCCTAtataatctacagtaacttactgtaaacaAATCACAGCAAAGatactgcatttacatttacagcatttaccttactgtatatgtatattcagtattgtaaattttaaaataaactgtaattttcacaatgcaacttaaaaataaaataacatactaTTTAGCTGTCctactgtaaaatacagtttatattacagttaaatactgtggaACTGTTTACAGTGGGTTAAGTTGGGGTACATCACATCAGACGGGTTTGGACTAATTCACATGCTTTGCTAAAGACATCTTGGACACACAACAATTCAAGTCTACATTTAACAGTTGACATAATTTCATTGACTGCATTACATGGTAGGATTGATCTATgtcttgcatttacatttttacgAGTCTTTGTTTGTGATTAAGTACTGTATGCAGATTTCCCTCTTTGAAGAGAGGCCCCTGCACAAAAATAAGATTGCATCCATGATTATAGAATGCtgtgaaatactgtaaaatcactgtattcattgcttgttttatattataaagaATTAGTTTTTTATGCATTGCTTAAAAAATGATTTGAGTTAAGCAATCGGGTACTAGAGGCATGCTAGATTGTGAGTTAGTTCCTTTGAATGATTATTACCTGTCCCAATACCTACACTTGTGGCAATTTACCTGCTTGTCTTGCATGTTGTATTTCTTATTTTTGGCACAGCTGTTCAAATGAATGTGTAGACTGCAAGTGTGTATAAAACCTTTGAGCAACCATTGGAATACATTTATAACAAAGTTTGTAATacagcataaataaaaaattgagcCAAGc

Function

GO:

id name namespace
GO:0000460 maturation of 5.8S rRNA biological_process
GO:0000466 maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0000469 cleavage involved in rRNA processing biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00021804 False 1106 lncRNA 0.34 3 22511982 22514463
TCONS_00021805 True 1665 lncRNA 0.36 3 22511982 22515521

Neighbor

gene id symbol gene type direction distance location
XLOC_010665 si:dkey-238m4.4 coding downstream 28969 22478161 ~ 22483013 (-)
XLOC_010664 tuft1a coding downstream 126277 22363700 ~ 22385705 (-)
XLOC_010663 NA coding downstream 143542 22362472 ~ 22368440 (-)
XLOC_010662 NA coding downstream 176465 22334292 ~ 22335517 (-)
XLOC_010661 si:dkey-92i15.4 coding downstream 208852 22295662 ~ 22303130 (-)
XLOC_010667 cgna coding upstream 5191 22520712 ~ 22585309 (-)
XLOC_010668 s100t coding upstream 166297 22681818 ~ 22683386 (-)
XLOC_010669 si:ch211-105c13.3 coding upstream 179690 22695211 ~ 22713192 (-)
XLOC_010670 tlr19 coding upstream 206831 22722352 ~ 22729491 (-)
XLOC_010671 tlr19 coding upstream 221960 22737481 ~ 22747125 (-)
XLOC_010626 CR392024.2 misc downstream 1616807 20895112 ~ 20895175 (-)
XLOC_010656 CR855277.4 non-coding downstream 447526 22060569 ~ 22064456 (-)
XLOC_010654 NA non-coding downstream 499662 22009119 ~ 22012320 (-)
XLOC_010653 NA non-coding downstream 521644 21960125 ~ 21990338 (-)
XLOC_010675 NA non-coding upstream 379155 22894676 ~ 22989262 (-)
XLOC_010676 NA non-coding upstream 501436 23016957 ~ 23019603 (-)
XLOC_010677 CT030031.1 non-coding upstream 820007 23335528 ~ 23337596 (-)
XLOC_010681 CR533578.4 non-coding upstream 1007740 23523261 ~ 23523375 (-)
XLOC_010682 CR533578.2 non-coding upstream 1076943 23592464 ~ 23592599 (-)

Expression


Co-expression Network