XLOC_010669 (si:ch211-105c13.3)


Basic Information

Item Value
gene id XLOC_010669
gene name si:ch211-105c13.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22695211 ~ 22713192 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020879
GTGTACGCCCAGTGATTTGATGGGAAAAAAAGCAACTCGGGAAGATTGGACTTCGCAGAAGAGGCATTTTTGGCTTAACCTGGGAGAGGCAAGAATCAGCAGAAGAGAAGATTCATTACAAAACTAGACATGGAAGGCGCcattaaaacagttgtcatgcagTACCTGTCTTCAGCACGGGGGAAGGAGAATCTGGGTGGAAAGAACTTCCAGAAGTTAGTCCAGAGCcagctgggaaacatccttaGTGACACTGAAAGCTCTTCGGCAGTGAAGGAAATGATGAGAGGACTGGATGACAACCAGGATGGGAAGGTCAGTTTCCAGGAGTACATGACGCTGGTAGGCTACCTAGCCACCTCACTGAGCGAGCAGAAGGCCAGCGGACAAGAAGACAAGCACTGATGACACCTGTAATGATCATTTGTGGAGCTGGGTTCTTACTCCAAGTACTCATGGTAAATAAAATaccattttctagacaagcaaaacatactggctttttttaggaaataatatgccaaaattaagtgtttttttcccctcaaaacaagcaaaatattctgccaataaagtaaacaaactaatcttatgtcaaaacagaaaaaaacacgattattttgcttaccccataggcagattatttagcttcttttagcaaataataataataattactataattttaccatattatttctctttttttatgattcatttttttattgtcttcATTAATTTAACAGCACAAgcaatttacatatttttacatccTTTAAACACACACTTTCCCCTCCCCTCCCCAACTGCAGTAATTAGATATTGCTATCATAAATCCAGTAAATacagaaaaaattatataaactcAATGAATAAAAAAGCACACATACAGGAAttattaatagtaaaataaataaataaacaacagcacaataataataatagctaaagGAATCAAATAAGATAATTACACTTCTACCTTGCATCTCCACACAGTAACCTTATTCCTCCTCTAAAAATGCCAAATAATTTCCCCATCTTCTCTGATAAACAtccaatttaaaaaagaaatcaatattttTCATATGCGGCCACCTTTCCCAATTCCGTAACCCATTTTTGAAATGATGGTGGACCTGCTGAATGCCATCCCCTCATAAGGATTTGTCTTCCGATCATAATTTGAATTCACTCAGACATCTTCACACCAGACCCCAACATGAACGGGTCTCCCAATACATATATTCCAGGACAAAAGGAAAAAGCAGCATCCAGAAACATCCTGAATGTAATTGTGCACTTTAACCCAGAATTCCTGTATTTTAGAACAGGACCACAGGGCATCCATCAAGTCTCCTTCGCTCCCACATCTCCAGCATTCAGCAGTCTTTCAACCCAAGCCTGAAAAGTCATCCAGTCAtccaaaaaaaaaccttttagcaTATTATTATGTCTAAAACAAGAtcatatttttgcttgtttagaaaatgcttcttgatttaagaatttttgatttttggactagaagcaagacaaaaaaaaaaagaaataaataaaataaaaaatctaaataagaaaagccATTTTTAACCTTTAAAACATGTGGTTACTTCAGTTATGCTTTGTGAGTTTACTGTCTGACAACTAGCCTCTAGTCtccagtaaaatatatataatcttgCAATTAAACTACAATGATCTGAAACACTTTAAAAGTCTCTGATAGTACAATGGAAATCTAATCTACTGTTTACACATATTGACATTTTACAAGTACAAACAGTGCCAAGTACAAGTGCAAATCTCATGGGcttgtttttgtacattttatccTGTTGTCTGAATTCTATGTAACAGTTTTCCATTTTAGTGctcatttgtgtttgtgttattGGAAACAAAATATGCCTGATTAGTGCTAGCTTAGAGAAGAAACAACAATGCATGAGTAATGAATGTAAGCCATCAAATACACTACAAAACAACTGACGATATACTCAATGTACTTCACTTCTGAATTGTCCAGTCAGAAGAATAATGAGGTAAAATCGAAAATGTTACACTACTGGAGAAATGTTTTTGTATGACCTTTTAATAAAAAGATGAGAGTAATGA
>TCONS_00020880
GAAGATTGGACTTCGCAGAAGAGGCATTTTTGGCTTAACCTGGGAGAGGCAAGAATCAGCAGAAGAGAAGATTCATTACAAAACTAGACATGGAAGGCGCcattaaaacagttgtcatgcagTACCTGTCTTCAGCACGGGGGAAGGAGAATCTGGGTGGAAAGAACTTCCAGAAGTTAGTCCAGAGCcagctgggaaacatccttaGTGACACTGAAAGCTCTTCGGCAGTGAAGGAAATGATGAGAGGACTGGATGACAACCAGGATGGGAAGGTCAGTTTCCAGGAGTACATGACGCTGGTAGGCTACCTAGCCACCTCACTGAGCGAGCAGAAGGCCAGCGGACAAGAAGACAAGCACTGATGACACCTGTAATGATCATTTGTGGAGCTGGGTTCTTACTCCAAGTACTCATGGACCACAGGGCATCCATCAAGTCTCCTTCGCTCCCACATCTCCAGCATTCAGCAGTCTTTCAACCCAAGCCTGAAAAGTCATCCAGTCAtccaaaaaaaaaccttttagcaTATTATTATGTCTAAAACAAGAtcatatttttgcttgtttagaaaatgcttcttgatttaagaatttttgatttttggactagaagcaagacaaaaaaaaaaagaaataaataaaataaaaaatctaaataagaaaagccATTTTTAACCTTTAAAACATGTGGTTACTTCAGTTATGCTTTGTGAGTTTACTGTCTGACAACTAGCCTCTAGTCtccagtaaaatatatataatcttgCAATTAAACTACAATGATCTGAAACACTTTAAAAGTCTCTGATAGTACAATGGAAATCTAATCTACT

Function

symbol description
si:ch211-105c13.3 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in cytoplasm.

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4483 Predicted to enable calcium ion binding activity and calcium-dependent protein binding activity. Predicted to be active in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000089441

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020879 False 2115 mRNA 0.35 3 22695211 22713192
TCONS_00020880 True 835 mRNA 0.40 4 22695578 22713152

Neighbor

gene id symbol gene type direction distance location
XLOC_010668 s100t coding downstream 11825 22681818 ~ 22683386 (-)
XLOC_010667 cgna coding downstream 109902 22520712 ~ 22585309 (-)
XLOC_010666 NA coding downstream 179690 22511982 ~ 22515521 (-)
XLOC_010665 si:dkey-238m4.4 coding downstream 212198 22478161 ~ 22483013 (-)
XLOC_010664 tuft1a coding downstream 309506 22363700 ~ 22385705 (-)
XLOC_010670 tlr19 coding upstream 9160 22722352 ~ 22729491 (-)
XLOC_010671 tlr19 coding upstream 24289 22737481 ~ 22747125 (-)
XLOC_010672 pbxip1b coding upstream 36982 22750174 ~ 22775528 (-)
XLOC_010673 lenep coding upstream 66037 22779229 ~ 22781446 (-)
XLOC_010674 shc1 coding upstream 68662 22781854 ~ 22863603 (-)
XLOC_010626 CR392024.2 misc downstream 1800036 20895112 ~ 20895175 (-)
XLOC_010663 NA non-coding downstream 326771 22362472 ~ 22368440 (-)
XLOC_010662 NA non-coding downstream 359694 22334292 ~ 22335517 (-)
XLOC_010656 CR855277.4 non-coding downstream 630755 22060569 ~ 22064456 (-)
XLOC_010654 NA non-coding downstream 682891 22009119 ~ 22012320 (-)
XLOC_010675 NA non-coding upstream 181484 22894676 ~ 22989262 (-)
XLOC_010676 NA non-coding upstream 303765 23016957 ~ 23019603 (-)
XLOC_010677 CT030031.1 non-coding upstream 622336 23335528 ~ 23337596 (-)
XLOC_010681 CR533578.4 non-coding upstream 810069 23523261 ~ 23523375 (-)
XLOC_010682 CR533578.2 non-coding upstream 879272 23592464 ~ 23592599 (-)

Expression


Co-expression Network