XLOC_010671 (tlr19)


Basic Information

Item Value
gene id XLOC_010671
gene name tlr19
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 22737481 ~ 22747125 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020883
ATGTTTGCGTTTGCAACAAACTCCAATTTCCTGCGCTTCTTTTGGAGAATTGCATTAGGTTTAAGTATCTGCAATGTGGTTTTAACTCGAATAACAAAGCGCTGCATTACTATAGAGGAGCATCTTCTCAAACAAATGCCGTGGACTCCACACTGCCTCCATTATCCAGGAAAGGGTCCATACGCAAACTGCAATATCACAGACCTGAGCACTGATCTGTCACAGGTAGGCTTTGAGGTTAGAACCCTTTGTGTCTTTGGAGATATTACGAGCATTCCTGCTAAAGCCTTTTCACACTTACCTTCTCTGGAGGTACTTCACATAGATGGAATACGTCTGGAGAGAGTTCAGGCTGGTGCCTTTGAAGGACTCCCCAATCTTAAGTATCTGTCAATGCTTTTCAGTGATGATCTCTACAGATTGGTCAAAATGGATAATCGGTCATTTGCTGGTCTGAATAATTTGGAGGAGTTGTCACTGACAGGTCTGATGCTGCTCAATGGATCCAGTGGTATATTTGACCCATTGGTTAGTTTAATCAGATTAGACATTGTCAGAACTTGCGCACAAGACCTTGGTGAAATTTTCTGTTGTATTTCGAATGGAATGACCCGGCTAAGACACCTAAATGTAGAAGACAGTGAGATTTCAACAATTGAGAACAAAGGATGTGCAGGGGGCTCAATGACCTGGCCGCTTACTGCCCTTTCTGGGGTTCAAAATCTGTATCTAATTGGGAACAATATTAAATCTATTCAAGCAAACTCCTTAAATATTTTCCAGAACCTCTCAAGCCTTTTTCTGGAGTTCGAGGGCAAGTCCCTGGGCAGTATTTGGGAGTCTGGAGTTGGAAAAGTCAATGATTTGACTTTGAAAGggaaagtattaaaaaaatactcaACAAACTTCAAAGATTTGTGTCATCTTGTATCGAGTCTTTATTCGCAATCACTCAGCCTTGTTTATACATCAATAGACAGACTAACTGCTGAGGACTTGAAGGACTGTGGGACTAAGTTGACAAAGTTATTAATCCAGAATTCCAAAATAGACAACCTAGACTTTAGGTTTTGGACCAGTAAACTGGAAATGCAGGCCCTTCAAATGGCCTACATGAAGTTGACAGATGCTCCCTTTTGTTTTGTTGCGAACAGCACAATGTGGTCTTTAACCTCACTGGACCTCACTGGAAACTCTATCACCAATATTGATGGAGATCAGTTTGCATGTATGCCTTTTCTTGAGCAGCTCTATCTGAGCCAGAATGCCATTAAAACCCTACAGCTGCATGCATTTCGAGGTTTGCTTCGACTCAAAATCCTACAACTTGACTCAAACAAGATCTCACAGCTTTCTGCCAATGATTTCAAAAACCTTCATGCTTTAGAGGTTCTGCTGATTAACGATAACATCATTGAGACTATAGAGACAGGAACATTTTGGGACCAGCGGGAGCTTCGTGAACTGTCATTTGGTAGACTGGAATATGTTTATGAGTTGCATCTAGAGAACATTTTTTTTGAATTTCCACCAAAGTTACAGCGACTCAGCATCGATGCACATTATGGAACTCATATTTACATTGGAAATGCATCACCACCCAATGGAACGTTTGCTCTGGAACTAAATGGAGAGAAACTAAGTTTTGCAGACTGTAAAAGTGATGTTTTAATGGCAGTCCGTGAGTTGAAAGTCAATTGCACCTTCTTCCTTTGTGAGAACCTCTTCATGGCTCCATATTTCCTAAACCTGGAATCTTTTGAGATCTCAGGCGGAGCTGAAAGGGCACCTCTCAATTACGCTACAATCAATAATCTTCACCATCTCAAGCATCTCAAACTCGCTGGGTTGAACTTCCCCAATTACACAGAATCTAGGAGTGCCTTTTGGAACCTGACTCAACTCCAGACCCTAGTGATGGTAAACTGTTATCTTAGTTTCCTCACCAAGAGCATGTTCAGAGATCTGACCTCTCTCCAGCTGTTGCGTCTCTACAGTGACAGTCCTCTGATCTTGACTGATGGTGTGTTTGGGGTTTTACCAGTGCTAAAAGCGTTCATTCTGGACAGAGTAGATTTCCAGTGCAGTTGTGAGAATGGCTGGCTACTTGATTGGGCAGACAGCACTGAAAAAGTGCAGGTTATCTACTTGCAAAAGCAGCAGTGTGTCTGGCACTATCAGAAACTCAACTTCTTGGCCACAATGGAGAAGCTCTGCCAGACTGATGCGCAGTACATCTGCTATGTAGCCACAGCCAGCAGCATTAGTCTTCTGTTGTCGGCAGCTGTTGGATATCGCTTTGCTCGCTGGCCTTCACTTGTCCTCTTCTTCCGCCTGAAAGGTTGGATGGAGAGAAGGTTTGGTCGACGGTGGAAtaggagaagaagaagaatggAGGATGACTATGGGGAGATCGAGGAGATGCAGTATGATGCTTTTGTGTCTTTCTGCAGCCAGGATGAGGCTTGGGTTTTGGGGGAAATGGCTCCTCGGCTGGAGGATCAAGGTAACCCAAGACTGAGACTGTGTCTGCACAACAGAGACTTTGAGGTGGGTAAAGATATCATGGACAACATCACAGACAGCATCCACAACAGTCAGTGCACTGTTTGTCTGATCAGCCGGCGGTATCTGCGCAGTGACTGGTGTGGTCTGGAGATGCGAGTGGCCACACACCGGCAGCTGGAAGAGCAGAAACACCGTCTCATCCTCATCTTCCTCCAACACATCTCTCCCTTTGAGCTCTCTGCTTTTCATCGTTTGGCAAAACTGGTGAGATCCCGTACATATCTGGACTGGCCAGAGGATGAAGGAGACCGAGAGCACTTCTGGGATCGACTAAGGAGGAACATTGCAGAAGATTCTGTAAAATCATCTCGCAGGGCGGATTAA
>TCONS_00020884
GTCCTCTTCTTCCGCCTGAAAGGTTGGATGGAGAGAAGGTTTGGTCGACGGTGGAAtaggagaagaagaagaatggAGGATGACTATGGGGAGATCGAGGAGATGCAGTATGATGCTTTTGTGTCTTTCTGCAGCCAGGATGAGGCTTGGGTTTTGGGGGAAATGGCTCCTCGGCTGGAGGATCAAGGTAACCCAAGACTGAGACTGTGTCTGCACAACAGAGACTTTGAGGTGGGTAAAGATATCATGGACAACATCACAGACAGCATCCACAACAGTCAGTGCACTGTTTGTCTGATCAGCCGGCGGTATCTGCGCAGTGACTGGTGTGGTCTGGAGATGCGAGTGGCCACACACCGGCAGCTGGAAGAGCAGAAACACCGTCTCATCCTCATCTTCCTCCAACACATCTCTCCCTTTGAGCTCTCTGCTTTTCATCGTTTGGCAAAACTGGTGAGATCCCGTACATATCTGGACTGGCCAGAGGATGAAGGAGACCGAGAGCACTTCTGGGATCGACTAAGGAGGAACAT

Function

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0002224 toll-like receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040220-3 Predicted to enable signaling receptor activity. Predicted to be involved in inflammatory response and toll-like receptor signaling pathway. Predicted to act upstream of or within innate immune response and signal transduction. Predicted to be located in cytoplasm. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000070392

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020883 False 2892 mRNA 0.44 4 22737481 22747125
TCONS_00020884 True 533 mRNA 0.51 3 22739305 22744806

Neighbor

gene id symbol gene type direction distance location
XLOC_010670 tlr19 coding downstream 7990 22722352 ~ 22729491 (-)
XLOC_010669 si:ch211-105c13.3 coding downstream 24289 22695211 ~ 22713192 (-)
XLOC_010668 s100t coding downstream 54095 22681818 ~ 22683386 (-)
XLOC_010667 cgna coding downstream 152172 22520712 ~ 22585309 (-)
XLOC_010666 NA coding downstream 221960 22511982 ~ 22515521 (-)
XLOC_010672 pbxip1b coding upstream 3049 22750174 ~ 22775528 (-)
XLOC_010673 lenep coding upstream 32104 22779229 ~ 22781446 (-)
XLOC_010674 shc1 coding upstream 34729 22781854 ~ 22863603 (-)
XLOC_010675 NA coding upstream 147551 22894676 ~ 22989262 (-)
XLOC_010676 NA coding upstream 269832 23016957 ~ 23019603 (-)
XLOC_010626 CR392024.2 misc downstream 1842306 20895112 ~ 20895175 (-)
XLOC_010663 NA non-coding downstream 369041 22362472 ~ 22368440 (-)
XLOC_010662 NA non-coding downstream 401964 22334292 ~ 22335517 (-)
XLOC_010656 CR855277.4 non-coding downstream 673025 22060569 ~ 22064456 (-)
XLOC_010654 NA non-coding downstream 725161 22009119 ~ 22012320 (-)
XLOC_010677 CT030031.1 non-coding upstream 588403 23335528 ~ 23337596 (-)
XLOC_010681 CR533578.4 non-coding upstream 776136 23523261 ~ 23523375 (-)
XLOC_010682 CR533578.2 non-coding upstream 845339 23592464 ~ 23592599 (-)

Expression


Co-expression Network