XLOC_010676


Basic Information

Item Value
gene id XLOC_010676
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23016957 ~ 23019603 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020897
GTGAATACAGCGTGAGCGCGCATTTTCTAATGGCTGCTGATCACTATTGCAGAAAGATCAAAGCAAGGCCAACCAGGATGAGATGAAAATGTGTATCAAGAGTTCAACCAGATAGTGTGGAAGAATCTTAAGCAAGAATTATATTGGTCTCTTGATCATCACTGCCCACAGCTGATTCGGATCTTCAGGTCAAAGAGAGGATTCACTGGACAGATTTTTATCTTCTACAAAATATCAAGGCGTCTGACCTCACTGACATGCCTTGTGTTGCCATTTGAGTGCTTCCAGTAGTTGTTGGTGATGACCCAACAGTTCTTCAAAGCATGTTTTGCTTCAGATGATGGAGACTCAAATCAACATGTGCCCGTTGGAATTCTTAACCAAGAAAATTAAGATGTGGCTCTGCAACCCCTGTCCTTCCACCTCCACCCATTCTCTGGGAATCATCTTGGAGGGAAATGTTGTAATGGACAATATAGACAATATACCCCAGGCCAAGTGTCTTTTTGGATCAACCTATGCACTGCACCTAGGCTACACAAAATGCATGGACAATACCCttctttttattcaacaagtTTGGGTAAGAAGATGCTGAAGGGTAAGATTCTGGCTGTTAAAAATCAACTTGTCATGTAAACTGGTACAGAAAAGGCATGTTCCTTCAGGCTTGCTGTCCTAACtgtgagataaaaaaaattaaaactatgcTTTAGTGTTTGGCAAGTGTAAATATTCCATAATGTTAAAATGTAATAACATCCTGtggttgtttattttttggatatgtttgtaaaaatgtatttaaaaattttaaacaagtgttttaataagatttataacaataaatattgaCTAATTGTTATACAAGGCATTTTCTAGTTTTGTCACTTGTTTCGGAGTGATAtttctaaatgattttaaataaactgtaaagtaaattttta
>TCONS_00022159
GGAAATGTGATTGGCTCTTTGTCTTTGGACTGACGTCACTGGTGAATACAGCGTGAGCGCGCATTTTCTAATGGCTGCTGATCACTGTGAGTACGATTTCATACTTTTGTCTCAAACAGTCCTCATTGTTTTCCTTTAATAAACAAAGTATGTAACCGTTAGCAAGAAAACCACATGTAAGATTAAGCTGTGTCTGACGTTAGGATCATGTTATTGTTCCGGTCAATCGCAACCGCCATTGCCACATTTATTAACAGTTCTAAGACGTGAAAAGTGCAAAGACGTGCGTAATAGGATCATGATAGatcatatattatgtaaaaaaaaagttaatgtaagtTTTGCCTGTGTTAGCGTATTCATTTATGCCACGTATAACCGATCACGGCCGCCGCATTTCATCTATATAATTCGTTACAGTTACGTGGAAACATGCTTTATGAGGTCGTCACGTATAAAGTTTAATATTGATGCTGTATTCGATGAGTCATCCGCGTTATCTTTTGTGTAAACTGATTATTTTTTCAGTGGTGGTTATGTGTCGTCAGATGTTTAGCATAACATAAcctgagctgtttttaacattttttttttttacttttttttcttgtaagtGAAGTATTAACTGACTAGAATACATTGAGATTTGCCCCTTCGGAAATACGAATTCATGTTAGTTGGCAGTTTTTAAAGATATGCAACCTCGTGCTCATCAGTCTTAGCAAGTGAATTTTCAGTTAATTAGAATGAAAGCTAAATAATTAACTGTAGCTCTCTAATTCTTTTGATTAACAATAGCTGTTTGTGGGAAATTTGGAGATAACAGATCAAattatgtaaatgtgttttgtcagctagtaatctaatgtatatttttgtaactGTAGATTGCAGAAAGATCAAAGCAAGGCCAACCAGGATGAGATGAAAATGTAAGTATTGCTCATTTGCTTGTGACAAAAGATGGTACTTATTAAAACATTGCAGATTTAAACATGGGAGCTATGCAAAAAGCCAGCCATTTCCATGCATATATCAGGAATGTATTTGTAATGAAATGAGTACAGTATTGATAAACatgataacatgctaatttgacagttgtttaattttgacatttctctgatgttaataaacatttttgtgttttacTACTACAGGTGTATCAAGAGTTCAACCAGATAGTGTGGAAGAATCTTAAGCAAGAATTATATTGGTCTCTTGATCATCACTGCCCACAGCTGATTCGGATCTTCAGGTCAAAGAGAGGATTCACTGGACAGATTTTTATCTTCTACAAAATATCAAGGTTTGTGTATGCCATTGTTTGTACATGCCTTTGACATAAATTGATGCCATTGTGTGCTGAATTCTGAAATTTATATAATTACTTTAGAAATCCTCAGTGACAGAGACTAAATTTTAATACATGAAAATGCCCTTTCTCTCATGTTGACAAATGATACAATGTTGTTTCTCTGCAACACCTCAGGCGTCTGACCTCACTGACATGCCTTGTGTTGCCATTTGAGTGCTTCCAGTAGTTGTTGGTGATGACCCAACAGTTCTTCAAAGCATGTTTTGTAAGTATCCTTAATAAAAGTTTTTGTATATTAATCTAAgtttttttgcattatatttcTTAATGTGCATTTATGTtagcaataacaataaataaatcacccaAGCAATGTCTTATTGTAGTTCATTAATAAATAGAATAATGATCAACATGAAATTTGAATTCATGTTATAACTCCTTTGAAACTCTAAAATGATAAGTAGAATTATATAAAGTCTTTAGTAATTTAATTATATCAAATCTTTTTATGCCGTATGCATTGACTTGTACACaaaaatatttgtagtatttttatatttgatatatCATTGAATACTGGATATGTTTGGGTATACAATTAACAAATTATGCTTGCATACAACTAAAAAACATtacatacaaataatatatattaaaatcaaatgtaCACCTCTAAGatatatttatgttatctatttatTGTTGTCAGGCTTCAGATGATGGAGACTCAAATCAACATGTGCCCGTTGGAATTCTTAACCAAGAAAATTAAGATGTGGCTCTGCAACCCCTGTCCTTCCACCTCCACCCATTCTCTGGGAATCATCTTGGAGGGAAATGTTGTAATGGACAATATAGACAATATACCCCAGGCCAAGTGTCTTTTTGGATCAACCTATGCACTGCACCTAGGCTACACAAAATGCATGGACAATACCCttctttttattcaacaagtTTGGGTAAGAAGATGCTGAAGGGTAAGATTCTGGCTGTTAAAAATCAACTTGTCATGTAAACTGGTACAGAAAAGGCATGTTCCTTCAGGCTTGCTGTCCTAACtgtgagataaaaaaaattaaaactatgcTTTAGTGTTTGGCAAGTGTAAATATTCCATAATGTTAAAATGTAATAACATCCTGtggttgtttattttttggatatgtttgtaaaaatgtatttaaaaattttaaacaagtgttttaataagatttataacaataaatattgaCTAATTGTTATACAAGGCATTTTCTAGTTTTGTCACTTGTTTCGGAGTGATAtttctaaatgattttaaataaactgtaaagtaaattttta

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022607 cellular component assembly biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0065003 protein-containing complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0006396 RNA processing biological_process
GO:0006413 translational initiation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0006457 protein folding biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0010499 proteasomal ubiquitin-independent protein catabolic process biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0030684 preribosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0005839 proteasome core complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0030532 small nuclear ribonucleoprotein complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0070003 threonine-type peptidase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004298 threonine-type endopeptidase activity molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020897 False 947 lncRNA 0.37 5 23016957 23019562
TCONS_00022159 True 2647 lncRNA 0.33 1 23016957 23019603

Neighbor

gene id symbol gene type direction distance location
XLOC_010675 NA coding downstream 27695 22894676 ~ 22989262 (-)
XLOC_010674 shc1 coding downstream 153354 22781854 ~ 22863603 (-)
XLOC_010673 lenep coding downstream 235511 22779229 ~ 22781446 (-)
XLOC_010672 pbxip1b coding downstream 241429 22750174 ~ 22775528 (-)
XLOC_010671 tlr19 coding downstream 269832 22737481 ~ 22747125 (-)
XLOC_010677 CT030031.1 coding upstream 315925 23335528 ~ 23337596 (-)
XLOC_010678 si:dkey-247k7.2 coding upstream 319459 23339062 ~ 23346095 (-)
XLOC_010679 trim46a coding upstream 333938 23353541 ~ 23379464 (-)
XLOC_010680 CR533578.3 coding upstream 446491 23466094 ~ 23471387 (-)
XLOC_010681 CR533578.4 coding upstream 503658 23523261 ~ 23523375 (-)
XLOC_010626 CR392024.2 misc downstream 2121782 20895112 ~ 20895175 (-)
XLOC_010666 NA non-coding downstream 501436 22511982 ~ 22515521 (-)
XLOC_010663 NA non-coding downstream 648517 22362472 ~ 22368440 (-)
XLOC_010662 NA non-coding downstream 681440 22334292 ~ 22335517 (-)
XLOC_010656 CR855277.4 non-coding downstream 952501 22060569 ~ 22064456 (-)
XLOC_010682 CR533578.2 non-coding upstream 572861 23592464 ~ 23592599 (-)
XLOC_010683 NA non-coding upstream 697228 23716831 ~ 23719573 (-)
XLOC_010686 NA non-coding upstream 965173 23984776 ~ 23995329 (-)

Expression


Co-expression Network