XLOC_010677 (CT030031.1)


Basic Information

Item Value
gene id XLOC_010677
gene name CT030031.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23335528 ~ 23337596 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020898
TACGTTTGTAGTTATATTGCCTGCAATATTCAGTTTTTTCATGATTCACTTACCAACTATAGGATTCAAGTACCTCTGTGGTGAGGAAGAGAGACGAGGCTCTGAGATGCCTCATTAAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATATATGGTGGACATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTACGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTTTTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCGACTTCTTCAGTTTCTGGATAAGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGGCaaagtttgttttgttatgtCAAATGCTGAGATCAGatgcactttattttttttatttcaatgttgTAGTACATATGAAAATGTACTGTACTGTGCAC
>TCONS_00020899
TGGAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCCTGCCCAGATAAATGAAGAATTCCAAAGGTGTACTGGTGTTCCACAAGAATCGGTTTTTATGTCCCAGCTGGACAAATACACTCCAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTGGTGAAAACATCAATTGGAGTTATTGGAACTGATACATGATTCAAGTACCTCTGTGGTGAGGAAGAGAGACGAGGCTCTGAGATGCCTCATTAAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATGGAAAAACAGAGAGCAGTGTCTATGAAGACTTGAAAATGCGCAATATGCAGATATATGTCTGCCGTGTTCCAGATATGGTGGACATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTACGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTTTTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCGACTTCTTCAGTTTCTGGATAAGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGGCaaagtttgttttgttatgtCAAATGCTGAGATCAGatgcactttattttttttatttcaatgttgTAGTACATATGAAAATGT
>TCONS_00020900
AATGTGTTTTTCTTTATCTTTTGGAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCCTGCCCAGGTAAATGATTTATCAATGACATGCTGCTTGGCAAATAATGGTGAACAAAGATGTTTATGTGATGCTAGACACACTTTTAGCTGAACACATACTGAAAATTTTACCTCACATGTTTTATGGAGGATTTCATTACATAGGAATAAAAGGTTGCCAATTCTTTACACATTTGGTTCCAAATAACAGACAAACAATTGATGTATTACAGATAAATGAAGAATTCCAAAGGTGTACTGGTGTTCCACAAGAATCGGTTTTTATGTCCCAGCTGGACAAATACACTCCAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTGGTGAAAACATCAATTGGAGTTATTGGAACTGATACATGATTCAAGTACCTCTGTGGTGAGGAAGAGAGACGAGGCTCTGAGATGCCTCATTAAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATGGAAAAACAGAGAGCAGTGTCTATGAAGACTTGAAAATGCGCAATATGCAGATATATGTCTGCCGTGTTCCAGATATGGTGGACATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTG
>TCONS_00022160
GGAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCCTGCCCAGGTAAATGATTTATCAATGACATGCTGCTTGGCAAATAATGGTGAACAAAGATGTTTATGTGATGCTAGACACACTTTTAGCTGAACACATACTGAAAATTTTACCTCACATGTTTTATGGAGGATTTCATTACATAGGAATAAAAGGTTGCCAATTCTTTACACATTTGGTTCCAAATAACAGACAAACAATTGATGTATTACAGATAAATGAAGAATTCCAAAGGTGTACTGGTGTTCCACAAGAATCGGTTTTTATGTCCCAGCTGGACAAATACACTCCAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTGGTGAAAACATCAATTGGAGTTATTGGAACTGATACATGTAAGGCAAACATGGTAACAATGTGGCTGATGCATGTTTATGCAATAAGTACTTTATTTACTCATCTTGCCTAATAGGTAACAAAGTCATTAATTTTAagggtaaatataaaaaaagcgtgtgtgtctctgtgtctgtgtatatgtatgtgcgtatgtgtatgtgtgtgtgtgtatgtatatatatatatatatataaatatatatatatatatatatatatatatatatgtgtgtgtgtatatatatatatatatatatatatatatgtgtatatatgtgttatttgtgtatatatgtatatgtgcgtgtctgtgtgtgtatgtatgtgtgtatatgtgtatatgtatatatgtatatatatatgtatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagagttgaACTCTGTTGAATAGGTTGTACAGAACCACACTGATAATGACATTTTACGTTTGTAGTTATATTGCCTGCAATATTCAGTTTTTTCATGATTCACTTACCAACTATAGGATTCAAGTAC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000093904

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020898 False 611 processed_transcript 0.40 2 23335528 23336562
TCONS_00020899 False 828 processed_transcript 0.42 4 23335542 23337575
TCONS_00020900 False 666 lncRNA 0.40 3 23335930 23337596
TCONS_00022160 True 1085 lncRNA 0.30 1 23336490 23337574

Neighbor

gene id symbol gene type direction distance location
XLOC_010676 NA coding downstream 315925 23016957 ~ 23019603 (-)
XLOC_010675 NA coding downstream 346266 22894676 ~ 22989262 (-)
XLOC_010674 shc1 coding downstream 471925 22781854 ~ 22863603 (-)
XLOC_010673 lenep coding downstream 554082 22779229 ~ 22781446 (-)
XLOC_010672 pbxip1b coding downstream 560000 22750174 ~ 22775528 (-)
XLOC_010678 si:dkey-247k7.2 coding upstream 1466 23339062 ~ 23346095 (-)
XLOC_010679 trim46a coding upstream 15945 23353541 ~ 23379464 (-)
XLOC_010680 CR533578.3 coding upstream 128498 23466094 ~ 23471387 (-)
XLOC_010681 CR533578.4 coding upstream 185665 23523261 ~ 23523375 (-)
XLOC_010682 CR533578.2 coding upstream 254868 23592464 ~ 23592599 (-)
XLOC_010626 CR392024.2 misc downstream 2440353 20895112 ~ 20895175 (-)
XLOC_010666 NA non-coding downstream 820007 22511982 ~ 22515521 (-)
XLOC_010663 NA non-coding downstream 967088 22362472 ~ 22368440 (-)
XLOC_010662 NA non-coding downstream 1000011 22334292 ~ 22335517 (-)
XLOC_010683 NA non-coding upstream 379235 23716831 ~ 23719573 (-)
XLOC_010686 NA non-coding upstream 647180 23984776 ~ 23995329 (-)
XLOC_010690 CR854851.1 non-coding upstream 1056750 24394346 ~ 24394463 (-)

Expression


Co-expression Network