XLOC_010678 (si:dkey-247k7.2)


Basic Information

Item Value
gene id XLOC_010678
gene name si:dkey-247k7.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23339062 ~ 23346095 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020901
ATCACACATGCAAAGATTTTCTCCTCTCCTCGATCAGAGCAGCTGTCAGTTTCTCTTCAGACTTCAAACAGCTATTCGTCTAGCAGTTTCGTTTTTGTAAAATCTCTGCAACAATGGCGCAGTTTGTCCAGCTGGCGGCAGTGTTGAGTTTGTGTCTCCTGGCAGCGGTGGTGAACGCTCAGGATAATGGGCCTGTTCAGAATACTTATGGAGAGCAGGTCTGCACTCACTACACTGATTCTGGCAACATACTTCTGGACGGAACAAGGTTCTTTGACTTGATGAGGTTTGAGTTCGGAGGAGATATCCAGACTCTGACCCCAATGGTGACTCAGCAATGGATGCAAGATGCCGATACTGATCATGACAATCGCCTCAACTTTGTGGAGTGTTCCCTTGTCGTCCAGAGAGTGCATGAATCTGTCCACAGGCCTCCTCAGATATAAAGAAGTCATACCGACTGGCTAAAGTAGCTTGCACATGAAAaaactcacacacacttatattgaATGCAAGCCCAGTGGCTTAACCTCATATAATCTCTTATATATATCCTATACATATATCACACTGTGATCTATAACTCAGAATAAATTAAAGCAATGATCTGTATGAGAAATTACTGTCAAATAAACGATTTAAAATAACTTGATGtggaattattatttaatttcttacaACAAAGGTTTCGAAGTGATGCCATGTTTCAAAGAACATTTTTTTCACAGTTGGAAAAACCttttaataatctaaagaacATTTTCAGCATGAAGAGTCACCTTTGCATTTTTAACCTGCAATATAAACAGCTTCTCTACAGATTTGCACAGATCTTGCACTTACTTTTAGTACTACATTTACTGCACTATTTCTATACTGTACTATACATTCTTTCATACTAACCTCCCTCatgtaaaatacaatagtaatttacagaatactatagtgttttgaaccataccaaagagaatcacc
>TCONS_00020902
GTCAGTTTCTCTTCAGACTTCAAACAGACTCTGACCCCAATGGTGACTCAGCAATGGATGCAAGATGCCGATACTGATCATGACAATCGCCTCAACTTTGTGGAGTGTTCCCTTGTCGTCCAGAGAGTGCATGAATCTGTCCACAGGCCTCCTCAGATATAAAGAAGTCATACCGACTGGCTAAAGTAGCTTGCACATGAAAaaactcacacacacttatattgaATGCAAGCCCAGTGGCTTAACCTCATATAATCTCTTATATATATCCTATACATATATCACACTGTGATCTATAACTCAGAATAAATTAAAGCAATGATCTGTATGAGAAATTACTGTCAAATAAACGATTTAAAATAA

Function

symbol description
si:dkey-247k7.2 Is expressed in post-vent region.

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-031118-45 Is expressed in post-vent region.

Ensembl:

ensembl_id ENSDARG00000103199

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020901 False 975 mRNA 0.39 4 23339062 23346095
TCONS_00020902 True 363 processed_transcript 0.39 2 23339390 23346051

Neighbor

gene id symbol gene type direction distance location
XLOC_010677 CT030031.1 coding downstream 1466 23335528 ~ 23337596 (-)
XLOC_010676 NA coding downstream 319459 23016957 ~ 23019603 (-)
XLOC_010675 NA coding downstream 349800 22894676 ~ 22989262 (-)
XLOC_010674 shc1 coding downstream 475459 22781854 ~ 22863603 (-)
XLOC_010673 lenep coding downstream 557616 22779229 ~ 22781446 (-)
XLOC_010679 trim46a coding upstream 7446 23353541 ~ 23379464 (-)
XLOC_010680 CR533578.3 coding upstream 119999 23466094 ~ 23471387 (-)
XLOC_010681 CR533578.4 coding upstream 177166 23523261 ~ 23523375 (-)
XLOC_010682 CR533578.2 coding upstream 246369 23592464 ~ 23592599 (-)
XLOC_010683 NA coding upstream 370736 23716831 ~ 23719573 (-)
XLOC_010626 CR392024.2 misc downstream 2443887 20895112 ~ 20895175 (-)
XLOC_010666 NA non-coding downstream 823541 22511982 ~ 22515521 (-)
XLOC_010663 NA non-coding downstream 970622 22362472 ~ 22368440 (-)
XLOC_010686 NA non-coding upstream 638681 23984776 ~ 23995329 (-)
XLOC_010690 CR854851.1 non-coding upstream 1048251 24394346 ~ 24394463 (-)

Expression


Co-expression Network