XLOC_010679 (trim46a)


Basic Information

Item Value
gene id XLOC_010679
gene name trim46a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23353541 ~ 23379464 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020903
ATGAAGAGTATGGAGCGTGAGCTGCACTGTCCGGTGTGTGAGGAGATGGTGAAGCAGCCCATTGTTCTGCCATGTtcgcacagtgtgtgtgtgttgtgtgcagcTGAAGTGTTGGTTCAGAGAGGTTATCCACCACCTGAACTCCCTCCAGAGCCCAACACTCCCACCTCCAGCCCCCTCACACGCTCCCCTCGACAGAACCGCAGACCTCCACCAAAAACAGACCGACTGGACAGAGTCATCAGGACAGTGTGCGGAACTCATCCGGGACGCAGGCGTAAAGACACCCCTCCTATACTCATGCTGTTCCCCTGTCCCACATGCAGAAGAGACGTGGAGCTGGGAGAGCGAGGCCTGGCCGACTGTCTGAGAAACCTCACGCTCGAGCGCATCGTGGAAAGgtaCAGGCATACAGTGAGTTTGGGCACTATGGCGATCATGTGCCAGTTCTGCAAACCTCCTCAGACTCTGGAAGCCACTAAAGGTTGCGCCGACTGCAGGTCCAACTTCTGCAATGAGTGCTTCAAACTGTACCACCCGTGGGGTACACCGCGTGCCCAGCACGAACACATCCTGCCCACACACAGCTTCAGACCCAAGGTGCTGGTGTGTGTGGAGCACGAGCAGGAGAGACTGCAGTTTTACTGTAGGTCATGTCAGCGTCTGTTGTGTTCACTGTGTAAACTCCGTCGTGCCCACAGTGGACACAAGATCATGCCGATTGCGCTGGCTTACCAGACTCTAAAGGACAAGATCACCAAGGAGATGAACTACATCTTAGCCAATCAAGACTCTGTGCAGGCACAGATCACCCAAGTAGAGAGTGGCATCGCACAGACTGAGGTGAACAGTGCGGTGGTGAAGGAGCAGttgtctcagtgtgtgaatgagctgCGAGCTGTGCTGGCCGAGCGTCAGGGGGCTTTGGCTATGTGTCTGGAAGGGTCTCGTGCACAGCGGGCAGCAGCTCTCAACGCTCAGCTCTCTGAAAAACAGAGTCTGCTGGAAAATGCAGGACTGCTCACATACACTCAGGAGCTGCTTAAGGAATCTGACCAGTCGTGCTTTGTTCAGGCTGCCAGAGTCACACACAACAGATTGGTAAAAGCAATAGAAAATCTGCagcatttctctctctctgctgatCCCTCTTTCCGACACTTTCAGATGGATGTCTCCAGAGAGCTCAAAGCACTCAGCAGCATGGACTTTATACAAGCCCCATTGGCTCCTGTGATTGACACTCAGAAGACCCTAGCCTATGACCAGCTGTATCTGTGCTGGCGTCTCCCACAAGACTCGGCCCCTGCCTGGCACTACTCAGTAGAGTTTCAGAGGAAAGTTGGTGGAGCTGGAGCAGTGTGGGGCAGGGTGTGGTCTGAAGGAAGCTCAGGAAGTAATGGGACACACTGTTCTTGGCAGCGTCTGGATGATGTGGGCGGGACCAGTGCCGTGATTGACAAGCTGGAGATGGACAGTGTGTACGTTCTGAGGGTTCGAGGATGTAATAAGGCAGGGTTTGGAGAGTACAGTGAGGAGGTGTATCTACACACAACACCTGCACCAGTGTTGTCGTTCTGCCTGGATTCGCGCTGGGGTCTGCATGCGGAGCGGGTGGCACTAGGGAAGGGGCAGACGTATGCTCGCAGCGTTCCTGGGATGACGCTCTTGCAGGCTGCAGATAGGGCCCTGACCTCCTGCCATCTCACATCTGACCTTCTCGTAGCTGATGTTTCCATCACACAGGGACGACACTACTGGGCATGCTCAGTAGAGCCTGGATCCTACCTGGTTAAGGTGGGAGTGGGTGTTGAAGCAAAGCTCCAAGAGTGGTTCCATCTACCACAAGACATGGCAAGTccacgGTATGATCCAGACAGTGGACACGACAGTGGCGCAGAGGACGCCCAAGACTGTCCTCCTCCTTTCTGTTTCCTCACAATGGGCATGGGCAAGATCTTACTTCCCAAGTGTGGCGGATCTAACAGCTCCACTGGACCTTTCACTGCCCCGTTACCACCTCGTCTCGGGCTGTGTCTGGACTTTGAAAAGGGACGACTCACTTTCTACGATGCTCACTCTCTTAGAGTGTTGTGGGAGGGGACTGTTGATTGCTCCGCCCCCATTTGCCCAGCCTTTTGTTTCATTGGTGGAGGCGCTCTACAGCTGCAGGAGCTAATAGCCAATCGCAGCACAGAGCAGAACCCACCAAGAAGAGTGACTATCCAAACACGAGTCACAGACGCAGGTCACTAA
>TCONS_00020904
CCCCGATTCAACATGGACTGCGTTAAATTGGACCTCTCAGACTTATTAGGcacaaataatataattataacgtAAAGCATCGTCTTAAGCGTCAATTTCAGTGGCAGTTGCagccatttcatttattttgcttttatatacCGTTCGTTGTCGTGAATGATTCCACAGATATAGACAAGAGAGCTCAATAATAGCGTTTATTGCGGACAATATCAACTGAACAACGGCACAGTTTCAGCGATGGCAGACGCGGAGTTGCAAACCTTTACATCCATCATGGATGCCCTCGTGCGCATAAGCTCTAACATGAAGAGTATGGAGCGTGAGCTGCACTGTCCGGTGTGTGAGGAGATGGTGAAGCAGCCCATTGTTCTGCCATGTtcgcacagtgtgtgtgtgttgtgtgcagcTGAAGTGTTGGTTCAGAGAGGTTATCCACCACCTGAACTCCCTCCAGAGCCCAACACTCCCACCTCCAGCCCCCTCACACGCTCCCCTCGACAGAACCGCAGACCTCCACCAAAAACAGACCGACTGGACAGAGTCATCAGGACAGTGTGCGGAACTCATCCGGGACGCAGGCGTAAAGACACCCCTCCTATACTCATGCTGTTCCCCTGTCCCACATGCAGAAGAGACGTGGAGCTGGGAGAGCGAGGCCTGGCCGACTGTCTGAGAAACCTCACGCTCGAGCGCATCGTGGAAAGgtaCAGGCATACAGTGAGTTTGGGCACTATGGCGATCATGTGCCAGTTCTGCAAACCTCCTCAGACTCTGGAAGCCACTAAAGGTTGCGCCGACTGCAGGTCCAACTTCTGCAATGAGTGCTTCAAACTGTACCACCCGTGGGGTACACCGCGTGCCCAGCACGAACACATCCTGCCCACACACAGCTTCAGACCCAAGGTGCTGGTGTGTGTGGAGCACGAGCAGGAGAGACTGCAGTTTTACTGTAGGTCATGTCAGCGTCTGTTGTGTTCACTGTGTAAACTCCGTCGTGCCCACAGTGGACACAAGATCATGCCGATTGCGCTGGCTTACCAGACTCTAAAGGACAAGATCACCAAGGAGATGAACTACATCTTAGCCAATCAAGACTCTGTGCAGGCACAGATCACCCAAGTAGAGAGTGGCATCGCACAGACTGAGGTGAACAGTGCGGTGGTGAAGGAGCAGttgtctcagtgtgtgaatgagctgCGAGCTGTGCTGGCCGAGCGTCAGGGGGCTTTGGCTATGTGTCTGGAAGGGTCTCGTGCACAGCGGGCAGCAGCTCTCAACGCTCAGCTCTCTGAAAAACAGAGTCTGCTGGAAAATGCAGGACTGCTCACATACACTCAGGAGCTGCTTAAGGAATCTGACCAGTCGTGCTTTGTTCAGGCTGCCAGAGTCACACACAACAGATTGGTAAAAGCAATAGAAAATCTGCagcatttctctctctctgctgatCCCTCTTTCCGACACTTTCAGATGGATGTCTCCAGAGAGCTCAAAGCACTCAGCAGCATGGACTTTATACAAGCCCCATTGGCTCCTGTGATTGACACTCAGAAGACCCTAGCCTATGACCAGCTGTATCTGTGCTGGCGTCTCCCACAAGACTCGGCCCCTGCCTGGCACTACTCAGTAGAGTTTCAGAGGAAAGTTGGTGGAGCTGGAGCAGTGTGGGGCAGGGTGTGGTCTGAAGGAAGCTCAGGAAGTAATGGGACACACTGTTCTTGGCAGCGTCTGGATGATGTGGGCGGGACCAGTGCCGTGATTGACAAGCTGGAGATGGACAGTGTGTACGTTCTGAGGGTTCGAGGATGTAATAAGGCAGGGTTTGGAGAGTACAGTGAGGAGGTGTATCTACACACAACACCTGCACCAGTGTTGTCGTTCTGCCTGGATTCGCGCTGGGGTCTGCATGCGGAGCGGGTGGCACTAGGGAAGGGGCAGACGTATGCTCGCAGCGTTCCTGGGATGACGCTCTTGCAGGCTGCAGATAGGGCCCTGACCTCCTGCCATCTCACATCTGACCTTCTCGTAGCTGATGTTTCCATCACACAGGGACGACACTACTGGGCATGCTCAGTAGAGCCTGGATCCTACCTGGTTAAGGTGGGAGTGGGTGTTGAAGCAAAGCTCCAAGAGTGGTTCCATCTACCACAAGACATGGCAAGTccacgGTATGATCCAGACAGTGGACACGACAGTGGCGCAGAGGACGCCCAAGACTGTCCTCCTCCTTTCTGTTTCCTCACAATGGGCATGGGCAAGATCTTACTTCCCAAGTGTGGCGGATCTAACAGCTCCACTGGACCTTTCACTGCCCCGTTACCACCTCGTCTCGGGCTGTGTCTGGACTTTGAAAAGGGACGACTCACTTTCTACGATGCTCACTCTCTTAGAGTGTTGTGGGAGGGGACTGTTGATTGCTCCGCCCCCATTTGCCCAGCCTTTTGTTTCATTGGTGGAGGCGCTCTACAGCTGCAGGAGCTAATAGCCAATCGCAGCACAGAGCAGAACCCACCAAGAAGAGTGACTATCCAAACACGAGTCACAGACGCAGGTCAC

Function

symbol description
trim46a Predicted to enable zinc ion binding activity. Orthologous to human TRIM46 (tripartite motif containing 46).

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110825-1 Predicted to enable zinc ion binding activity. Orthologous to human TRIM46 (tripartite motif containing 46).

Ensembl:

ensembl_id ENSDARG00000012367

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020903 False 2256 mRNA 0.54 11 23353541 23372666
TCONS_00020904 True 2559 mRNA 0.53 12 23353544 23379464

Neighbor

gene id symbol gene type direction distance location
XLOC_010678 si:dkey-247k7.2 coding downstream 7446 23339062 ~ 23346095 (-)
XLOC_010677 CT030031.1 coding downstream 15945 23335528 ~ 23337596 (-)
XLOC_010676 NA coding downstream 333938 23016957 ~ 23019603 (-)
XLOC_010675 NA coding downstream 364279 22894676 ~ 22989262 (-)
XLOC_010674 shc1 coding downstream 489938 22781854 ~ 22863603 (-)
XLOC_010680 CR533578.3 coding upstream 86630 23466094 ~ 23471387 (-)
XLOC_010681 CR533578.4 coding upstream 143797 23523261 ~ 23523375 (-)
XLOC_010682 CR533578.2 coding upstream 213000 23592464 ~ 23592599 (-)
XLOC_010683 NA coding upstream 337367 23716831 ~ 23719573 (-)
XLOC_010684 rps27.2 coding upstream 409152 23788616 ~ 23800484 (-)
XLOC_010626 CR392024.2 misc downstream 2458366 20895112 ~ 20895175 (-)
XLOC_010666 NA non-coding downstream 838020 22511982 ~ 22515521 (-)
XLOC_010663 NA non-coding downstream 985101 22362472 ~ 22368440 (-)
XLOC_010686 NA non-coding upstream 605312 23984776 ~ 23995329 (-)
XLOC_010690 CR854851.1 non-coding upstream 1014882 24394346 ~ 24394463 (-)

Expression


Co-expression Network