XLOC_010680 (CR533578.3)


Basic Information

Item Value
gene id XLOC_010680
gene name CR533578.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23466094 ~ 23471387 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020905
gttgtaaatgagggcgatgccaaccctcttgtgcaccaccagagggaaccatcgccagaattctgattcgactcacggactcaaaatcccataagccctgctacctggcactgattactgtccaggtgcaactcatcagctctcgtgtatatataccacactcacgctccggttcgttgcgaagtcttgatttgcctggctgtcatttctgagcgttccatactccctgcttcggactgatctgtgtttctgaccctgtgcttgttctacgattacgaaagacatctgcctgcccctgatcttcagcctgttattctgaccagtaagatatctgcctgcctttgaacttttgcctgtcccacgttctgtctcctggattgcccctttgtgtttgtttgtatgtgtgctcttaataaagcttgcaaatggattcaatgccttctgactcatcacaacagaagacttcgcctctacagaatccagcagctttagcacaagtctcgactgaactttccgctcaagccactcagttagccacccatcatcaacaactcacccatctaacttctctcatggaggaactggtgagagctatgcagcaactccgtcatccgaatcctgcagttaccccgcctgctaccatgacagcttctcaaccaacgcatgtctccaatgctccggctaccgtaagtccccgattagcttttcctgaaaagtttgatgggtcaccttctcgctgcaaaggcttcttattgcaatgcaaactatttgttaaccaacaacctgcattatatcccactgattctagtcgggtggcttttgtatgcaacctgttaacggggaaagcgctggaatgggctacagcgatatggaaggaggaggaatgtaactatcccacatttgaaacttttctcaagcaatttcgggaagtgttcgagcacccagcagatgggagaagccccggtgagcagttactttctcttacacaggggcgtaacacagctgcagaatacgccctgtcatttcgcactctcgccgctcaaactaactgggttgaggatacactgaagacactattcagacggggtctgaataccaatctacaatctgaattggcttgccgtgacgaaggaaagaaattgaacgaactcattgaacttaccatccgtcttgatcatctgattcgcagccgtagaaatcctcgcacacagctccatgtttcaagtgacacgccccctgatgaacccatgcaactgggtttcacccgtctcacccatgaagaaagaatgcatcgattgcaaaatcatctatgcctgtactgcggtcaatcagggcacaggaaatccacctgcagcgtacgacctcagacaccagttcaatcggtgagtccttcccatgttcctgcacttttcagtgtactgattcctgtgattattaaatttgataaaagaatgattaatactacggctcttgtcgactctggatctgccggaaactttatatctaagaaatttgctttatgtcacgaactatctctcagctcatatgattcctgtcttgcagtggaagcactagacggtcgtcctgtgggtgaaggacgcatccgtatgattacgaataagctacagttacaagttggtgttctacacattgaagaaatgcaattctacattattgattcagttaatcatccactggtgttgggactgccctggttaaggcgacatgatcctcatatctcctggagggaAGGACAGATATTGAagtggagtgagtcatgcatgaaacagtgcatccagcccattcacaaaattccattacgaaccaccaatgtgttacctgaactcgttgatgaactaatccccattgagtaccatgacttacatgaagcttttagcaaacaaaaagctactcaacttcctccacatcgaccaagtgattgtgctattgagttaattccaggttcaagtcctccaacgggtcgaatattccctctgtcacaacctgagcacaaggcaatgtctgaatatatcgacgaggaattggccaagggtttcatccgaccttctacatctcctgcttcagctggattcttctttgtaaagaagaaagatggcagtttacgtccctgtattgattaccgagggctcaatgaaatcaccgtaaaattccgctatccattacccctcgtacctcctgccctggaacaattaagaaaggctagatattataccaagcttgatcttcgcagtgcatataaccttgtcagaatccgtgctggtgacgagtggaagaccgcgttttccaccactagggggcactatgagtacacggtaatgcccttcggcctgtcaaactgtccatccgtgttccaatcttttatgaacgatgtctttcgggatatgctggatcgctgggtcatcatttacatcgacgacatcctcatatattcaaacacgatgaaggaacatgttgaacatgtacgtatggtgttgcaacgcatgattcaacatcgtctgtacgccaaattagagaagtgtgaatttcaccagacacagatcgcctttttgggatacgtcatcagtgcagaagggattaccatggatgatacgaaggtacaggcagttcaacgatggccgttaccccagaatctcaaggagttgcagcgatttctaggttttgccaacttctatagacggtttatcagaggctttagttcaatagccgcaccattaacagccatgaccaaacgaaattcccacaaactatcctggtcctctgaagcacgccaagcatttagcgatctgaagactcaattcaccacagctcctattctccgtcatcccaacccagacctacctttcattgtggaagtggatgcatccaacacaggagtcggtgctgtgttatctcaacgtcagggtcaaccatccaaaatgtatccatgtgccttcttctcccgtaaattgaccagcgcagaacgaaactatgatgtgggaaatcgcgaattactggcaatgaaattagccctggaagaatggagacactggctggagggggctagtcagcaattcaccatattaactgaccacaagaatctggaatatcttcgctcagccaaacgtctaaatcccagacaagctcgatgggctttgttcttcaccagattcgacttcattgtcacctatagaccagggagtaaaaacagtaaggcagatgcactatccaggctatcagaggataaaaccccaattagtgatgaaaccattattcctacgaacttactagtggctccagtacagtgggacatacttaccgagatccaagaggccaaccgagaaaacaaccctccagtagactgtccgaatcacctgatttttgtacccaataacatacgtaccagattactgacccatattcatgacactcccagttcggggcatccaggcatcactgcaactttggagttagtcaaagcccgtttctggtggccgtccctcacgaaggatgtaattaattatgttcagaaatgtaaaatttgccaaagcacgaaggcatctcaccaaacccctgctggcctgttacaaccgctaccggttccgcaacggccctggtcccatatagcggtggacttcattacggatctccctgtttcccagaacaacacagtcattctcacggtggttgatcgtttctccaaggcttgtcgcctaataccgttgcccaaattgccttctgcctttgaaaccgcagaagccctgtgcaaccatgtatttcgaatgtttggcttacctgatgatatcgtctcagacaggggatcccaattcacttcccgggtatggtccgctctctgtaaaaatctaaatattaatgttagtctcacctcaggataccatcctcaatccaacggccaaactgaacgtatgaatcaagaagtcattcgatttctacgttcctactgtcatcagcaacagcacgactggagtcgctatctgatgtgggcagaatatgcacaaaattcattaataaagccagccacgggtattacgccattcaaatgtattcttggctaccaaccacccctgtttccatggtccggagaacccactgagttacctgctgtcacggattggctgcagcggagtgaggatgtctggaaccaggctcacagacatctcatgagggcagtcaggaggagagagattcaggcgaaccgtcaccgacgccagggacccacgtatcaaccggggcagtgggtgtggttgtcgacacgagaccttcgtctgagattgccctgccgcaaactcagtcccaggtatgtagggccattcaaaattgtacgccagattactccagtgtcttttcgcttagccttgcctaatcattatcgtatttctcctactttccacatgtcattactcaaacccgctggtggtccacgagaggaggcggttgaggaggaatcggaaaccaggacccctccacctgtcatgatcgagggcgaggaagcttatctcgttcgagaagtgctggactctcgacgtcggggtggcgccctccaatatctggtggactgggaagggtacggtccagaggaacggtcctgggtgaatgctagagatattctagacccaactctcacggaagagtttcatcaaaggttcccagagaaaccagccccccgacagcgcggtagaccccggcgtcaggtgccttctcgcttcaggagccgctcgcaggaggggggttctgttgtaaatgagggcgatgccaaccctcttgtgcaccaccagagggaaccatcgccagaattctgattcgactcacggactcaaaatcccataagccctgctacctggcactgattacggtccaggtgcaactcatcagctctcgtgtatatataccacactcacgctccggttcgttgcgaagtcttgatttgcctggctgtcatttctgagcgttccatactccctgcttcggactgatctgtgtttctgaccctgtgcttgttctacgattacgaaagacatctgcctgcccctgatctccagcctgttattctgaccagtaagatatctgcctgcctttgaacttttgcctgtcccacgttctgtctcctggattgcccctttgtgtttgtttgtatgtgtgctcttaataaagcttgcaaatggattcaatgccttctgactcatcacaacacaGCTACACTTCAACTGCCactttcagcaaacctcctaacaggtgcagcacaatgacttttatgaaaatgtatgtgTCAAAAGCAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000115891

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020905 True 5294 mRNA 0.48 1 23466094 23471387

Neighbor

gene id symbol gene type direction distance location
XLOC_010679 trim46a coding downstream 86630 23353541 ~ 23379464 (-)
XLOC_010678 si:dkey-247k7.2 coding downstream 119999 23339062 ~ 23346095 (-)
XLOC_010677 CT030031.1 coding downstream 128498 23335528 ~ 23337596 (-)
XLOC_010676 NA coding downstream 446491 23016957 ~ 23019603 (-)
XLOC_010675 NA coding downstream 476832 22894676 ~ 22989262 (-)
XLOC_010681 CR533578.4 coding upstream 51874 23523261 ~ 23523375 (-)
XLOC_010682 CR533578.2 coding upstream 121077 23592464 ~ 23592599 (-)
XLOC_010683 NA coding upstream 245444 23716831 ~ 23719573 (-)
XLOC_010684 rps27.2 coding upstream 317229 23788616 ~ 23800484 (-)
XLOC_010685 osgin2 coding upstream 408617 23880004 ~ 23885482 (-)
XLOC_010626 CR392024.2 misc downstream 2570919 20895112 ~ 20895175 (-)
XLOC_010666 NA non-coding downstream 950573 22511982 ~ 22515521 (-)
XLOC_010663 NA non-coding downstream 1097654 22362472 ~ 22368440 (-)
XLOC_010686 NA non-coding upstream 513389 23984776 ~ 23995329 (-)
XLOC_010690 CR854851.1 non-coding upstream 922959 24394346 ~ 24394463 (-)

Expression


Co-expression Network