XLOC_010684 (rps27.2)


Basic Information

Item Value
gene id XLOC_010684
gene name rps27.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 23788616 ~ 23800484 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020908
GGTAGCCCCCCCTTTTCGGCTGCTGCTCCGCTGTCGCCAACATGCCTCTCGCGAAGGATTTGTTGCACCCGACGCCAGAGGAGGAGAAGAGAAGACACAAGAAGAAGCGTCTCGTACAGAGTCCCAACTCTTATTTTATGGATGTCAAATGCCCAGGCTGTTATAAGATCACTACCGTGTTCAGTCACGCACAGACGGTGGTCTTGTGTGTAGGATGCTCCACTGTTCTCTGCCAGCCCACTGGAGGAAAGGCTCGCCTCACAGAAGGATGCTCGTTCAGAAGAAAGCAGCACTAGTCTCTCATTAACCAATATGCAAGGATGAGGGAGATGACGGGAGGAGAGACAGGATTGGCCACTCCACGGGGATTTCAGGCCATGTTTCTGATCTATAACGGGGCAATGGAGATGAAAGCTAAACCGAGAAGAGTGCAGAAAACTTGAAATGTCGCAGTGCTGTCTGAACACAGAGCATGTGAGGTGTAGAATCACCAAacctgtctctctctccctctctactTTAAATAAAGGTTCCTTTTTCATTTA
>TCONS_00020909
AAATGCAgtcaggaggaggaggaggaaaacaCGGGACGATCCGCAGGACTGATTGAGCTCGACTGGGGAAGCTCGCGAAGGATTTGTTGCACCCGACGCCAGAGGAGGAGAAGAGAAGACACAAGAAGAAGCGTCTCGTACAGAGTCCCAACTCTTATTTTATGGATGTCAAATGCCCAGGCTGTTATAAGATCACTACCGTGTTCAGTCACGCACAGACGGTGGTCTTGTGTGTAGGATGCTCCACTGTTCTCTGCCAGCCCACTGGAGGAAAGGCTCGCCTCACAGAAGGATGCTCGTTCAGAAGAAAGCAGCACTAGTCTCTCATTAACCAATATGCAAGGATGAGGGAGATGACGGGAGGAGAGACAGGATTGGCCACTCCACGGGGATTTCAGGCCATGTTTCTGATCTATAACGGGGCAATGGAGATGAAAGCTAAACCGAGAAGAGTGCAGAAAACTTGAAATGTCGCAGTGCTGTCTGAACACAGAGCATGTGAGGTGTAGAATCACCAAacctgtctctctctccctctctactTTAAATAAAGGTTCCTTTTTCATTTA
>TCONS_00020910
tgtgcaaagtatgtaaatcactgtgaagactttaaaacttaggatgtttgacccagtatgcgtgtcaaaaagcggacgagtctaaagcaatgactgtacaaccgaaatgttgccagatgtctgattttgagaggatgggccatcctctatttcagctccactcatcttggtctgctaacattactgctgctgcaatctgaactcgtgtgcgacagcaggtggaacgtagctcacgtgcaaacagctcaactaataagagaaaacggacgtcatatcgtaatcaaatcgtcatgaCGCCacaatgcatattgtgacattcttgtatcgcaataaatcgtacaacgataaatcgttacacccctagtgttTACACTCAAAATGGACTTTGATTGAAAGCTGCTTAGTATTTGTGCACTATTACATTTGCTAGTCTTGCATATGAATTATAAGCCTTTATGTTTGAGACTTTGGGCCATTCTCTCTTTGCAGGCTGTTATAAGATCACTACCGTGTTCAGTCACGCACAGACGGTGGTCTTGTGTGTAGGATGCTCCACTGTTCTCTGCCAGCCCACTGGAGGAAAGGCTCGCCTCACAGAAGGATGCTCGTTCAGAAGAAAGCAGCACTAGTCTCTCATTAACCAATATGCAAGGATGAGGGAGATGACGGGAGGAGAGACAGGATTGGCCACTCCACGGGGATTTCAGGCCATGTTTCTGATCTATAACGGGGCAATGGAGATGAAAGCTAAACCGAGAAGAGTGCAGAAAACTTGAAATGTCGCAGTGCTGTCTGAACACAGAGCATGTGAGGTGTAGAATCACCAAacctgtctctctctccctctctactTTAAATAAAGGTTCCTTTTTCATT

Function

symbol description
rps27.2 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit assembly. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 17. Orthologous to human RPS27 (ribosomal protein S27).

GO:

id name namespace
GO:0000028 ribosomal small subunit assembly biological_process
GO:0006412 translation biological_process
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1735 Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in ribosomal small subunit assembly. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 17. Orthologous to human RPS27 (ribosomal protein S27).

Ensembl:

ensembl_id ENSDARG00000055475

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020908 False 545 mRNA 0.50 4 23788616 23797570
TCONS_00020909 False 569 mRNA 0.49 4 23788616 23800484
TCONS_00020910 True 876 lncRNA 0.44 2 23788618 23792874

Neighbor

gene id symbol gene type direction distance location
XLOC_010683 NA coding downstream 69043 23716831 ~ 23719573 (-)
XLOC_010682 CR533578.2 coding downstream 196017 23592464 ~ 23592599 (-)
XLOC_010681 CR533578.4 coding downstream 265241 23523261 ~ 23523375 (-)
XLOC_010680 CR533578.3 coding downstream 317229 23466094 ~ 23471387 (-)
XLOC_010679 trim46a coding downstream 409152 23353541 ~ 23379464 (-)
XLOC_010685 osgin2 coding upstream 79520 23880004 ~ 23885482 (-)
XLOC_010686 NA coding upstream 184292 23984776 ~ 23995329 (-)
XLOC_010687 bcam coding upstream 229788 24030272 ~ 24135573 (-)
XLOC_010688 rps19 coding upstream 387630 24188114 ~ 24195361 (-)
XLOC_010689 cadm4 coding upstream 412594 24213078 ~ 24518040 (-)
XLOC_010626 CR392024.2 misc downstream 2893441 20895112 ~ 20895175 (-)
XLOC_010677 CT030031.1 non-coding downstream 451020 23335528 ~ 23337596 (-)
XLOC_010676 NA non-coding downstream 769013 23016957 ~ 23019603 (-)
XLOC_010690 CR854851.1 non-coding upstream 593862 24394346 ~ 24394463 (-)
XLOC_010703 BX539313.3 non-coding upstream 1199195 24999679 ~ 25012398 (-)
XLOC_010704 NA non-coding upstream 1268020 25068504 ~ 25072892 (-)
XLOC_010708 NA non-coding upstream 1437766 25238250 ~ 25241068 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G140437 NA non-coding CI01000027 null 4975727 ~ 4991547 (+)