CI01000075_00257233_00263578 (RAB8A)


Basic Information

Item Value
gene id CI01000075_00257233_00263578
gene name RAB8A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 257233 ~ 263956 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000075_00257233_00263578.mRNA
AGAGTCTGGCTGAGGCAAAACAGCAGAACCTGGAGATGCATCAAGTCCTGGATCAAACGCTCCAGGAGCTCAACAGCTTGTATCGATTTCAAGATCAGGACAATAGAACTAGATGGCAAGAAGATAAAGTTACAAATATGGAAGGAGGAGGTCATCTTCCACTTTACCAGACCTGCAAAACACATTTCAGCAGGGCCACAGTTACAACACTATTATTGTTTGATATTTACAGGGACACGGCAGGACAAGAACGATTCCGAACGATCACAACAGCATATTACAGAGGAGCAATGGGTATCATGCTGGTTTATGATATTACCAATGAGAAATCATTTGACAACATCAAAAACTGGATCCGAAACATCGAGGAGCATGCATCAGCAGATGTAGAAAAAATGATTTTGGGGAACAAATGTGACATTAATGAGAAGAGGCAGGTGTCCAAAGACAGAGGCGAGAAGCTGGCGTTAGAGTACGGCATCAAGTTCATGGAGACGAGTGCGAAGGCTAATATCAATGTTGAGAACGCATTCTTAACGCTCGCCAGAGACATAAAGTCAAAGATGGACACGAAATTGATTAGCGATGCCGCTCATGACCCTTCCCTGGCGAAAGAAAGCATTGGTTCTACAAGTCAAGGTGAAGAGCCGGTTGCAGATGCATCGCCGTAAACGCGCACCTAAAGAAGATCCCGTACCTCCATCTTTGTTTCAATCGCTCGTTTTGAGCACACAACTGCCAAAATCGATCCATTCCTTCATGGCGACCTGGAAGTACTTGTGATTGTGAATCTGGGTCTGGCCGCAGAGCGTGATCTAACATTGAGCCAATTTGAGAATTCCGTGGGGCGATCTTTATCATTCCATTTTATTTTCGGCGTATTCTTCGACAATCACATGACCTTATTGTAAGTAGAGGAATATTATAACCCGCCTCTTAAATGCTTCAATTATTATTTTTTTTGTCCCCAGTTTTATTTTTCACACTGATCGTTCACACAAAATTGGTGCAGTCAAGGTTTCACAGACATGGCTAATGATATTTTCATA

Function

symbol description
rab8a Predicted to enable GTP binding activity and GTPase activity. Involved in melanosome transport. Acts upstream of or within photoreceptor cell outer segment organization. Predicted to be active in cytoplasmic vesicle; dendritic spine; and plasma membrane. Orthologous to human RAB8A (RAB8A, member RAS oncogene family).

GO:

id name namespace
GO:0008021 synaptic vesicle cellular_component

KEGG:

id description
K07901 RAB8A, MEL; Ras-related protein Rab-8A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000075_00257233_00263578.mRNA True 1049 mRNA 0.43 8 257233 263956

Neighbor

gene id symbol gene type direction distance location
CI01000075_00252158_00255198 NA coding upstream 2027 252158 ~ 255206 (+)
CI01000075_00216589_00224690 RX2 coding upstream 32375 216129 ~ 224858 (+)
CI01000075_00190821_00197570 CPLX4C coding upstream 59324 190566 ~ 197909 (+)
CI01000075_00110314_00117133 NA coding upstream 139966 110028 ~ 117267 (+)
CI01000075_00093704_00094561 JUND coding upstream 162581 93211 ~ 94652 (+)
CI01000075_00293769_00296813 NA coding downstream 29813 293769 ~ 297085 (+)
CI01000075_00500237_00500551 NA coding downstream 235753 499709 ~ 500672 (+)
CI01000075_00548373_00566336 ACSS2L coding downstream 284417 548373 ~ 566483 (+)
CI01000075_00656048_00662437 NAPG coding downstream 392053 656009 ~ 663751 (+)
CI01000075_00682733_00683937 NA coding downstream 418527 682483 ~ 685507 (+)
G288711 NA non-coding upstream 10167 244902 ~ 247066 (+)
G288735 NA non-coding upstream 18151 238869 ~ 239082 (+)
G288694 NA non-coding upstream 35378 149450 ~ 221855 (+)
G288754 NA non-coding downstream 40022 303978 ~ 304246 (+)
G288755 NA non-coding downstream 41152 305108 ~ 316301 (+)
G288773 NA non-coding downstream 60389 324345 ~ 328337 (+)
G288757 NA non-coding downstream 66548 330504 ~ 336468 (+)
G288781 NA non-coding downstream 103099 367055 ~ 367296 (+)
G288708 NA other upstream 19962 235398 ~ 237271 (+)
CI01000075_00917306_00921588 NA other downstream 653545 917306 ~ 922416 (+)
CI01000075_01364135_01365758 EEF2B, EEF2L2, EEF2.2, EF2, EEF2 other downstream 1064830 1364122 ~ 1365843 (+)
CI01000075_01404076_01444348 UNC13A other downstream 1120087 1404076 ~ 1444410 (+)
G289319 NA other downstream 1336225 1600181 ~ 1605306 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016953 rab8a coding NC_007113.7 CM002886.2 55270566 ~ 55298075 (-)