XLOC_010687 (bcam)


Basic Information

Item Value
gene id XLOC_010687
gene name bcam
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24030272 ~ 24135573 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020912
GCTTCTGAAGCTCACACCCTGCAGTGGACAAAGGACTCGAAGGAGCTGTCAAACACTGGTGTATTTGCTAAGGAGTCTGTGACTCTGGCTGACGGTGGTGTGTACGTGTGTGTCGGAGCTGTACCTTCAGTGCCAGGTCTTCAAAAACAAGTCAACATCACTGTTAACGTCAAAGGTCAGCCTGAGATTGATGCTCCAGTCAAGGGTTTGGTTGATAAGGAGGGAGGGATGGTCACTCTCAACTGCTCTGCTCTTGGTCATCCTGCTCCACAATTCATCTGGACACCTTCTGGCAAAGagTCGGTGACAGTAAAAGGGAACAGGGTGATCAGCACAGTCACTCTTGAGGCCACAGCTGCAGTTCTGAAGGACGGTGTGATTTGTGAAGCGTACAACACTCATGGAAGAGACAGCAAGAACTTCGAGGTGAAACTAGaTCAAGCAAAACCCACACCTGCCAATTCTGACAGAGGAAATCCTGACTTTAAAACAGTGGAAGGAAAGCAGGGCGGTTCGAGTTCTGTGGTGATCGCTGTGGTGGTGTGTGTCCTGCTGCTGCTCATCCTGGTGGCTTCGCTCTTCTTCCTTAATAAGAAGGGCAAACTAGGCTGCGGGAAGAAGGACCAGAAGGAAGTGGCTTCTGGAGGAGTGAAAGATAATATTGTGGTGGAGATTAAGCCCAGTGAGAAAAGCAAGGAAGAGGCTGGTCTGCTAAAGCCTGCAGAACAG
>TCONS_00020913
TTTCGTACGCCAAGAAGGACGGGATCAACtgcactgctgtgtgtgtgagtgtaagagCAGAGGGTGAAGGAGCTGTACGGAGACGAGACTGAAGAAATATAACGACACAACGCGACACAAAGCCGCCAAGTTACGACGCAACTATGAAGAGAGCGATATCGGGACCGTTCTGGATTTGCTGCACCTTGCTTGCTGTAGTGCTGCAAGTATGTTTGGCTTCAGTCACAGTCAAGGTGAATCCAGAAATGCACGTTCTTAAAGGAGATACAGTCATGCTGCCCTGTACGTACACCACCTCTGCAGAGGCTGCGGTTGCGGTCCAGTGGTTTATTGAATTTGCTGATGGAGGCAGAAAGCAAGTCGCCTACAAGTCCTCCGTAGGCTCTGATGCTGGAACATTTACAGATCGCTATACCATAGAAAAGGACATGTCCCTTAATATCTCCCAAGTCACAGTGGACGATCACAAAAAATTTATCTGCCAAGTGACCGCGGGGCCTGTGGGCACTGCCGAGTCTGCCACCGAGGTCAAGGTTTTCTCTGCTCCAGAGAAGCCAATGGTAGTGCCCAATCCTCAGAAAATCTTTGTCGATTCCAGCATTTCATCCTCCGCTGAGgtgGGCAAGTGCATCAGCAGGAATGGTCATCCTGAGCCTCGTATTATCTGGTTTAAAGACGACAACCCTCTgcctgaagaaaagaaaaaaacagaaaAAACATACATGATACATTTTTTGGTGAAGGAAGCCTCAGGCCTGTACACTTTGACCAGCATGCTGTACATGCACCTGACGAAAGCTGATGCTAAATCAGTCTACCACTGCATAGTGGAGTACACCATGCCAGACAACCAGATCAAACAGGAGAGCTCCGATAACTTCAACATCTCATTGCAATATTCAACAGAAAACGTCTTCTTCAAAGTGAAGAACGAGGGGCCAATCAAAGAGGGCGATGATGTGGTGATGCAGTGTGAGACTGATGGAAACCCTCAGCCacagtttgatttttttaaagggGAAAAATTGCTGGAAGGATTGGGAGGCACTTTGAAAAAAAAGAGCATCACTCGGGAGGATTCTGGAACTTATAAGTGTGAAGCTATGGATTATGAAGCTGACAGCAAAGTCCAACTTCATAAAACTCTAAACATAAACGTGCACTATATCGACATAACAGTGGAACCAGAAGGGCCCTTGGTTGTTTCTAAAGGAGATCATGTGGAGCTTCAGTGTAAGGCCAAGGCTTCTGAAGCTCACACCCTGCAGTGGACAAAGGACTCGAAGGAGCTGTCAAACACTGGTGTATTTGCTAAGGAGTCTGTGACTCTGGCTGACGGTGGTGTGTACGTGTGTGTCGGAGCTGTACCTTCAGTGCCAGGTCTTCAAAAACAAGTCAACATCACTGTTAACGTCAAAGGTCAGCCTGAGATTGATGCTCCAGTCAAGGGTTTGGTTGATAAGGAGGGAGGGATGGTCACTCTCAACTGCTCTGCTCTTGGTCATCCTGCTCCACAATTCATCTGGACACCTTCTGGCAAAGagTCGGTGACAGTAAAAGGGAACAGGGTGATCAGCACAGTCACTCTTGAGGCCACAGCTGCAGTTCTGAAGGACGGTGTGATTTGTGAAGCGTACAACACTCATGGAAGAGACAGCAAGAACTTCGAGGTGAAACTAGaTCAAGCAAAACCCACACCTGCCAATTCTGACAGAGGTAGACACTTGTCCCAGCTCTCTCTGCTCCTTCTCTCCTTCTCAGGACTCTTTCTTGTACACACTCTGTGATCTTGCTCTCCAGCCCTTTACACtgtatattatgtactgttaCCAATCACtgtgtatattgtatattgtattacGTATGTGCTCTTTGTATGATTGTCCGTCCTCTATTTTGTTGATGCTGCACCTTTAACTTTTCCTTCACTGGGGTCAATAAAGGATTCTGTTCTATTTTACTA
>TCONS_00020914
GAAGGAGCTGTACGGAGACGAGACTGAAGAAATATAACGACACAACGCGACACAAAGCCGCCAAGTTACGACGCAACTATGAAGAGAGCGATATCGGGACCGTTCTGGATTTGCTGCACCTTGCTTGCTGTAGTGCTGCAAGTATGTTTGGCTTCAGTCACAGTCAAGGTGAATCCAGAAATGCACGTTCTTAAAGGAGATACAGTCATGCTGCCCTGTACGTACACCACCTCTGCAGAGGCTGCGGTTGCGGTCCAGTGGTTTATTGAATTTGCTGATGGAGGCAGAAAGCAAGTCGCCTACAAGTCCTCCGTAGGCTCTGATGCTGGAACATTTACAGATCGCTATACCATAGAAAAGGACATGTCCCTTAATATCTCCCAAGTCACAGTGGACGATCACAAAAAATTTATCTGCCAAGTGACCGCGGGGCCTGTGGGCACTGCCGAGTCTGCCACCGAGGTCAAGGTTTTCTCTGCTCCAGAGAAGCCAATGGTAGTGCCCAATCCTCAGAAAATCTTTGTCGATTCCAGCATTTCATCCTCCGCTGAGGT

Function

symbol description
bcam Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; mesoderm; nervous system; pronephros; and tail bud. Orthologous to human BCAM (basal cell adhesion molecule (Lutheran blood group)).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-620 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including cardiovascular system; mesoderm; nervous system; pronephros; and tail bud. Orthologous to human BCAM (basal cell adhesion molecule (Lutheran blood group)).

Ensembl:

ensembl_id ENSDARG00000090190

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020912 False 729 mRNA 0.50 8 24030272 24044664
TCONS_00020913 False 1963 mRNA 0.47 13 24033136 24135573
TCONS_00020914 True 554 mRNA 0.50 4 24050071 24135508

Neighbor

gene id symbol gene type direction distance location
XLOC_010686 NA coding downstream 34943 23984776 ~ 23995329 (-)
XLOC_010685 osgin2 coding downstream 144790 23880004 ~ 23885482 (-)
XLOC_010684 rps27.2 coding downstream 229788 23788616 ~ 23800484 (-)
XLOC_010683 NA coding downstream 310699 23716831 ~ 23719573 (-)
XLOC_010682 CR533578.2 coding downstream 437673 23592464 ~ 23592599 (-)
XLOC_010688 rps19 coding upstream 52541 24188114 ~ 24195361 (-)
XLOC_010689 cadm4 coding upstream 77505 24213078 ~ 24518040 (-)
XLOC_010690 CR854851.1 coding upstream 258773 24394346 ~ 24394463 (-)
XLOC_010691 si:ch211-79k12.1 coding upstream 387251 24522824 ~ 24550029 (-)
XLOC_010692 si:ch211-79k12.2 coding upstream 416325 24551898 ~ 24561354 (-)
XLOC_010626 CR392024.2 misc downstream 3135097 20895112 ~ 20895175 (-)
XLOC_010681 CR533578.4 non-coding downstream 506897 23523261 ~ 23523375 (-)
XLOC_010677 CT030031.1 non-coding downstream 692676 23335528 ~ 23337596 (-)
XLOC_010703 BX539313.3 non-coding upstream 864106 24999679 ~ 25012398 (-)
XLOC_010704 NA non-coding upstream 932931 25068504 ~ 25072892 (-)
XLOC_010708 NA non-coding upstream 1102677 25238250 ~ 25241068 (-)
XLOC_010710 BX571853.2 non-coding upstream 1192958 25328531 ~ 25328647 (-)

Expression


Co-expression Network