CI01000075_00917306_00921588


Basic Information

Item Value
gene id CI01000075_00917306_00921588
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 917306 ~ 922416 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000075_00917306_00921588.mRNA
ATGAGAGGGAAAAACACTAATGTTAAACTAATACATATGGTGGTTAGCCACAGAATCAAAGAAAACAAATACAAAATCCTGATAGACAAATGGTTTTCATTTAACCAACAATTCAATGAAATTTTCCCATCATTTCCTTGTGAGGGATGTGGCTTTACCAGGCTCAGGTATCAGGGTTGGGCCCGTTATAAATCAATGCAGATGGGAAACGTCCACAGAGTCCTGGGAAGAAACTGCTTTTCTCCTTTCTTTACAAACAAGAGACACTGGGATATCATGCGGTTCAGCGTCCTCTTCTTCGTCGTCCTCCTGGGCTTCCTCTACCTCACACTGGCTCAAGGCTCGTATGAGGACTGCTGCCTTAAGTACATCAGGCATATGAAACCGCCCATGAAGAACAAAGTGAGCAGCTACAGAAAACAAGAGATGGACGGAGGCTGCAACATCCCTGCTATTGTCTTCACAATGAAACAAGGCCGTATGTTTTGCGCTGATCCCAGAGAAAAATGGGTCCATGAACTCATGCAGAAGGTGGACAAACAAGCATTCCATTCTTCCAAGAGGAAGACCTTTGTCGCTTCACTGATGGACTGCTGGTTAAATGCTCAAAATGGGAGATGGCCATTATTTCCCCTTTCCACATGCTGCTGTAACCCTCACTTCCAGGCTCTGTTACAAAACCTTCTGAACTTCCTTGATGTCTGCTTCTAAGTGACTCTGCATTGAAAGCAACTTAATCAGCGCTCAGTTAGTGCTCCTCATGTAAACCGCACAGGAAACTTACAATTCGGCAATGCATGTTGCTAAGCTAACAATACAATAATCTAATTATAACCTAAAAAA
>TU327648
ATGCAGATGGGAAACGTCCACAGAGTCCTGGGAAGAAACTGCTTTTCTCCTTTCTTTACAAACAAGTAGAGACACTGGGATATCATGCGGTTCAGCGTCCTCTTCTTCGTCGTCCTCCTGGGCTTCCTCTACCTCACACTGGCTCAAGGCTCGTATGAGGACTGCTGCCTTAAGTACATCAGGCATATGAAACCGCCCATGAAGAACAAAGTGAGCAGCTACAGAAAACAAGAGATGGACGGAGGCTGCAACATCCCTGCTATTGTCTTCACAATGAAACAAGGCCGTATGTTTTGCGCTGATCCCAGAGAAAAATGGGTCCATGAACTCATGCAGAAGGTGGACAAACAAGCATTCCATTCTTCCAAGAGGAAGAATGTAAGGGGCTAAACAAGAGAGAGGACCAGAGGGATGCTGCCCGAGTGTCTCGGCCAATCACATTCTTTCTTTGAGTTACGGCTCTCCAAGCGCACATTTCAGCATGGATTGACTGATGTTCTCAGTACTTCCTGTATTCCGCCCTGTGCTCTATGTGGGATCAGGTGGTATTTCCTGTTTCCAGACCTTTGTCGCTTCACTGATGGACTGCTGGTTAAATGCTCAAAATGGGAGATGGCCATTATTTCCCCTTTCCACATGCTGCTGTAACCCTCACTTCCAGGCTCTGTTACAAAACCTTCTGAACTTCCTTGATGTCTGCTTCTAAGTGACTCTGCATTGAAAGCAACTTAATCAGCGCTCAGTTAGTGCTCCTCATGTAAACCGCACAGGAAACTTACAATTCGGCAATGCATGTTGCTAAGCTAACAATACAATAATCTAATTATAACCTAAAAAAATAAATCTATATAAAAAGCATATTTGAATACCCTGCGCAATGTATGCAATATATGATGCTTGCTAAGTAGGCAGCTCACTAGGTTTTAGAACAGAGCTTAAATGTACAGCGTCACCTTGAGGGTCATATTAAGCTATTGTATTATGAACTTTCACTTTGCACACTTTGATTTACTGCTTTTTGCCCCATGGTATCTATAATAAACAGTCAATGTGATAAAAATATTAGGCAACAAGTTGCCATAAATGTGGGTGGGAAGGTTTTGCAACACAGATAATCCTTCTATTTCCTTATGAGTTTATTATACAGCTTACACACCGACGAGTGATTTTTGGAGTTTGTACAATATTATAATGCATTGTAAATTATGATTTGTTACTGTGCTTAATGCAGTAAGCTTAAGTGATTATTATTTTAGTTATTGATAAAATGAATATGCATAGATCTCATTTATATTCGTAAATCTAAATCTCTTCATTCTGTGAGGTTTTATAAGTTTAGTAGAGTTTTTTTTTTTTTTTTATTTAAGTGGAACTACTTTTTCACATTTAATGTTCACTTTAACACCCAATCCAGAGAATGTATCTTTATAGAGGACGTGATGCAATCAGTTTTATTGTTTGGATGTTTTGAAACTGGGTCACATGCTCTTTGGGTTCCGTACCTGATAAAGTGTTCTATACACTGCAGATTTTT
>TU327647
AATTTTAAGTGCTTTTTGACAACACAAAAAGCCTTTATGTTCACTCTTAATATGGTAATGATGTCCAAGGGTCAAGGCTGAGAAATAAGGATAAGTGTTCTGGAAAATCCGGCCTCTGATGCTGATAAGGTTTATGGAAGCTCTTGTAAGAACACCTGTTGTGTGAGCATGTGTTTGTAAGAGTATCGGTTTGTGATTTTCTGTCTCATTGTGCAGTAGAGACACTGGGATATCATGCGGTTCAGCGTCCTCTTCTTCGTCGTCCTCCTGGGCTTCCTCTACCTCACACTGGCTCAAGGCTCGTATGAGGACTGCTGCCTTAAGTACATCAGGCATATGAAACCGCCCATGAAGAACAAAGTGAGCAGCTACAGAAAACAAGAGATGGACGGAGGCTGCAACATCCCTGCTATTGTCTTCACAATGAAACAAGGCCGTATGTTTTGCGCTGATCCCAGAGAAAAATGGGTCCATGAACTCATGCAGAAGGTGGACAAACAAGCATTCCATTCTTCCAAGAGGAAGAATGTAAGGGGCTAAACAAGAGAGAGGACCAGAGGGATGCTGCCCGAGTGTCTCGGCCAATCACATTCTTTCTTTGAGTTACGGCTCTCCAAGCGCACATTTCAGCATGGATTGACTGATGTTCTCAGTACTTCCTGTATTCCGCCCTGTGCTCTATGTGGGATCAGGTGGTATTTCCTGTTTCCAGACCTTTGTCGCTTCACTGATGGACTGCTGGTTAAATGCTCAAAATGGGAGATGGCCATTATTTCCCCTTTCCACATGCTGCTGTAACCCTCACTTCCAGGCTCTGTTACAAAACCTTCTGAACTTCCTTGATGTCTGCTTCTAAGTGACTCTGCATTGAAAGCAACTTAATCAGCGCTCAGTTAGTGCTCCTCATGTAAACCGCACAGGAAACTTACAATTCGGCAATGCATGTTGCTAAGCTAACAATACAATAATCTAATTATAACCTAAAAAAATAAATCTATATAAAAAGCATATTTGAATACCCTGCGCAATGTATGCAATATATGATGCTTGCTAAGTAGGCAGCTCACTAGGTTTTAGAACAGAGCTTAAATGTACAGCGTCACCTTGAGGGTCATATTAAGCTATTGTATTATGAACTTTCACTTTGCACACTTTGATTTACTGCTTTTTGCCCCATGGTATCTATAATAAACAGTCAATGTGATAAAAATATTAGGCAACAAGTTGCCATAAATGTGGGTGGGAAGGTTTTGCAACACAGATAATCCTTCTATTTCCTTATGAGTTTATTATACAGCTTACACACCGACGAGTGATTTTTGGAGTTTGTACAATATTATAATGCATTGTAAATTATGATTTGTTACTGTGCTTAATGCAGTAAGCTTAAGTGATTATTATTTTAGTTATTGATAAAATGAATATGCATAGATCTCATTTATATTCGTAAATCTAAATCTCTTCATTCTGTGAGGTTTTATAAGTTTAGTAGAGTTTTTTTTTTTTTTTTATTTAAGTGGAACTACTTTTTCACATTTAATGTTCACTTTAACACCCAATCCAGAGAATGTATCTTTATAGAGGACGTGATGCAATCAGTTTTATTGTTTGGATGTTTTGAAACTGGGTCACATGCTCTTTGGGTTCCGTACCTGATAAAGTGTTCTATACACTGCAGATTTTT

Function

NR:

description
small inducible cytokine SCYA103

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000075_00917306_00921588.mRNA False 843 mRNA 0.43 5 917306 921720
TU327648 False 1534 TUCP 0.40 5 917501 922416
TU327647 True 1684 TUCP 0.39 4 917914 922416

Neighbor

gene id symbol gene type direction distance location
CI01000075_00877796_00880322 NA coding upstream 36862 877796 ~ 880444 (+)
CI01000075_00864628_00867240 NA coding upstream 49229 864029 ~ 868077 (+)
CI01000075_00821649_00821906 NA coding upstream 95235 821498 ~ 825595 (+)
CI01000075_00800884_00806063 NA coding upstream 110832 800780 ~ 806474 (+)
CI01000075_00682733_00683937 NA coding upstream 232734 682483 ~ 685507 (+)
CI01000075_01015651_01022674 NA coding downstream 93931 1015651 ~ 1022813 (+)
CI01000075_01033320_01042574 AP1M1.S, AP1M1 coding downstream 111500 1033220 ~ 1043695 (+)
CI01000075_01159479_01160597 KLF2B coding downstream 237759 1159479 ~ 1160663 (+)
CI01000075_01364135_01365758 EEF2B, EEF2L2, EEF2.2, EF2, EEF2 coding downstream 442415 1364122 ~ 1365843 (+)
CI01000075_01404076_01444348 UNC13A coding downstream 482356 1404076 ~ 1444410 (+)
G288956 NA non-coding upstream 3381 913645 ~ 913925 (+)
G288948 NA non-coding upstream 44451 872398 ~ 872855 (+)
G288918 NA non-coding upstream 90617 788771 ~ 826689 (+)
G288905 NA non-coding upstream 190491 726571 ~ 726815 (+)
G288916 NA non-coding downstream 19030 940750 ~ 941054 (+)
G288912 NA non-coding downstream 66415 988135 ~ 992947 (+)
G288994 NA non-coding downstream 87830 1009550 ~ 1009768 (+)
G289272 NA non-coding downstream 152170 1073890 ~ 1074094 (+)
G289275 NA non-coding downstream 157772 1079492 ~ 1079785 (+)
G288755 NA other upstream 609385 305108 ~ 316301 (+)
G288708 NA other upstream 680035 235398 ~ 237271 (+)
G289319 NA other downstream 678461 1600181 ~ 1605306 (+)

Expression


Co-expression Network