XLOC_010689 (cadm4)


Basic Information

Item Value
gene id XLOC_010689
gene name cadm4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 24213078 ~ 24518040 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020918
atgtgtatgtgtgtgtgtgagtactaGTATGTAACACACAACCGATTCCAGCGAACACTGGAGTTGAGGAAAGACACAACTCGTAGGTGAAAGCCTGCGCGCTCATGTTATTCTAATTCCCATCAGAGGAAGAGGAATAAACTGAGAGATCGGAATAACACACACATGATGATGGCATTTTCTTCTGTTTGGAAGTATTGGGCCCCGCTTCCTCTCCTGCTGCTCCTGTACTCGCATACAGCGAGAGGGCAGGCCGTCCAGGCGGAGAACGTGACCGTGCTGGAGGGAGGAACGGCTCAGATCTCCTGCCGTCTCCAGAATTATGACGGTTCAATCGTGGTCATCCAGAACCCACGCAGACAGACGCTCTTCTTTAATGGAACACGAGCGCTGAAAGATGACCGTTTTCAGATGGTTCTTTTTACGCCGAAGCTGGTGCGCATCACGTTGACTAATGTAAGTGTGTCAGACGAGGGTGGCTACTTCTGCCAGCTCTACACCGATGATACACACCACCAGGTGGCGACGCTGTCGGTGGTGGTGCCCCCGGAGGTACCCAGCGTGGAGGTGAAAACAGAGGCGGTGGAGGGAGGAGAGGTTGAGCTCACATGTTTGTCCCTGCGGAGCAAACCTCCAGCCACACTGCGCTGGGTTCGAGACCGCAGAGAGATCCCAGGTGTGATCTCCCAGCAGGAGAATGGCAAGACTGTGAGTGTTTCCAACACTATCCGTATCCCCGTGGAGAGGAAAGATAACAGAGCGGCGCTGAGCTGTGAGGCGTCTCATCCCGCACTCGTGAGCCAGAAGCGAGTTCGTCACTACAGCCTGGACGTTCACTTTGCTCCTACGGTGAAAATCGTTCCCCCTCAGGGCATCCTCCGAGAGGGAGACTCCCTCAGTCTCACCTGCTCCGTTACCGGAAACCCACTACCACGTGACATCCAGTGGTCACGAGTGAACGACACTCTTCCTGAGAGGGCGGAGAAAACCGGCAACATCCTCCACATGTCTCGCCTCAGCCAATCACACAATGGCACCTACCTCTGTCAGGCACATAATAATTACGGCCGTGCAGCTGATCACTACACACTGCTGGTGTATGTGTCTGTTGCTCAATCTCATCCTGCCATCGCTCACCCCAACCTTCCATCCTCAAAGGAATACCAAGATCCTGGAGCAGTGGTGGAGACCCACAGTGCCGTCCCGTTTGCAGTGATTGGGGGCATCCTGGCCCTGCTGGTCTTCACTGTCATATGTGTGCTCATCGTCACCATCTGGTGCTCCGTCCGGCAGAAAGGTTCTTATTTGACTCATGAGGCCAGTGGTTTGGACGAACATGGCGAGGTTCAGGAGGCCTTCCTCAACGGAAATGATGCCAGCCAGGGCAAGAAGGAGTACCTACTGTAGCGCTGCCGTGGTGGAATTCTTGAGAAACACTGGACCGCTGCAGACTGCACACCGCAACACACACTGTTCCCAAACAGACCTACacaccactactacaacaaccaGAGGGAATCACAATCGTGCCATATGAAGGAAGATGGAGTGGGAAGGAGAGGACGGAGATATTAATGGAGGAGCGAGAGAGATGAAAGGAGAGAACAATTATTCTGACTGAAAAACACCATCATGGTCACTCTCTTTTTTTAGTTGTGACAACTAAACTGTAATTGCAGGACCAAGAGAGAAAAGTGTCCATTTCTAAACAGTGCCTCTATGGCTTATGAGGTATTGAATGTCTCAAAGTGAGCAAATTGAAATCTTCTGCATTTTTATGCAGCACTGGGCCTCAGAGACTGAGCCGGTAGAGAATAAATCCACCAACAACAGCGCTGAGAGCTCAGAGCCGTCCTCATAAAGTATTTATCTGCGCTTTTCATCCAGCAACTCCATTATCTGCTCACGCTGGCCAAAACCTGTTGACTTGTGAAGAAAAGTTCCTCTCGTTTTTGATCCTCTCTCGGTGACTCTCTCCAGCGCTCCTTCCTCTCCCTCCTCTATCTCTCCACTattgtttgttaataattaagGGATTAGACATGTTCTCTTTTATGAGCCGAATGAATTGAAGCAGACCGCTTGCTTCAACGCTGTAAAAAAGGGGGCTTAATTATCGCAAAGTCATTGGAAACGTGGAACCGCGACTTGGGTGAGAAAAAAAGACAGTTTGTCGAGAACATGTcggaaattacatttttttgttttgttttttgattgctccacacagaaacacacaatgAAACATATCTCTAAAGTCATTATTTGTATGAAAAAGTCTACAAAGTAAGTTAAATGActcttttaagaaaaaaaaaaaaaacttttgcgcGCATTACCGAGCGATGCTACCGTACTAACACAGAATATTAGCTTAGAGGTGCAAAACTGAACAAACTACTGTTAcgtcatctttaaaaaaaaacttgcaaaattaaaaaaaaaaaatatctattttgtTTGTCTTTAAAAGATATCAGAGGTCTTAATTgttttgattaattattatttggactattatgatcgttgttattgttattattattcttactgTTATTATAATTGTAAATGTTATAAATTGTATACTTCCCATGCTTTAGTTCTACCAGTAGAAACAGCCGTGTATACCCACTTTTCTCTCTCCTCCACTTTTCTCTGATCCTCTTTGTGTCTTTCTCCCTCTTCGTCCGTCTCCTCTTTGTCTTTCACTTCCTGTTTATTTTATAGTCTTTGCGTCGCTGTTGATATAGCTAACTGTACATCTTTATAGGGGAAAGATACCAAGcacgacaaaataaaaaatacttaaaaga
>TCONS_00020919
TTGAGAgcgtgcatgtgtatgtgtgtgtgtgagtactaGTATGTAACACACAACCGATTCCAGCGAACACTGGAGTTGAGGAAAGACACAACTCGTAGGTGAAAGCCTGCGCGCTCATGTTATTCTAATTCCCATCAGAGGAAGAGGAATAAACTGAGAGATCGGAATAACACACACATGATGATGGCATTTTCTTCTGTTTGGAAGTATTGGGCCCCGCTTCCTCTCCTGCTGCTCCTGTACTCGCATACAGCGAGAGGGCAGGCCGTCCAGGCGGAGAACGTGACCGTGCTGGAGGGAGGAACGGCTCAGATCTCCTGCCGTCTCCAGAATTATGACGGTTCAATCGTGGTCATCCAGAACCCACGCAGACAGACGCTCTTCTTTAATGGAACACGAGCGCTGAAAGATGACCGTTTTCAGATGGTTCTTTTTACGCCGAAGCTGGTGCGCATCACGTTGACTAATGTAAGTGTGTCAGACGAGGGTGGCTACTTCTGCCAGCTCTACACCGATGATACACACCACCAGGTGGCGACGCTGTCGGTGGTGGTGCCCCCGGAGGTACCCAGCGTGGAGGTGAAAACAGAGGCGGTGGAGGGAGGAGAGGTTGAGCTCACATGTTTGTCCCTGCGGAGCAAACCTCCAGCCACACTGCGCTGGGTTCGAGACCGCAGAGAGATCCCAGGTGTGATCTCCCAGCAGGAGAATGGCAAGACTGTGAGTGTTTCCAACACTATCCGTATCCCCGTGGAGAGGAAAGATAACAGAGCGGCGCTGAGCTGTGAGGCGTCTCATCCCGCACTCGTGAGCCAGAAGCGAGTTCGTCACTACAGCCTGGACGTTCACTTTGCTCCTACGGTGAAAATCGTTCCCCCTCAGGGCATCCTCCGAGAGGGAGACTCCCTCAGTCTCACCTGCTCCGTTACCGGAAACCCACTACCACGTGACATCCAGTGGTCACGAGTGAACGACACTCTTCCTGAGAGGGCGGAGAAAACCGGCAACATCCTCCACATGTCTCGCCTCAGCCAATCACACAATGGCACCTACCTCTGTCAGGCACATAATAATTACGGCCGTGCAGCTGATCACTACACACTGCTGGTGTATGATCCTGGAGCAGTGGTGGAGACCCACAGTGCCGTCCCGTTTGCAGTGATTGGGGGCATCCTGGCCCTGCTGGTCTTCACTGTCATATGTGTGCTCATCGTCACCATCTGGTGCTCCGTCCGGCAGAAAGGTTCTTATTTGACTCATGAGGCCAGTGGTTTGGACGAACATGGCGAGGTTCAGGAGGCCTTCCTCAACGGAAATGATGCCAGCCAGGGCAAGAAGGAGTACCTACTGTAGCGCTGCCGTGGTGGAATTCTTGAGAAACACTGGACCGCTGCAGACTGCACACCGCAACACACACTGTTCCCAAACAGACCTACacaccactactacaacaaccaGAGGGAATCACAATCGTGCCATATGAAGGAAGATGGAGTGGGAAGGAGAGGACGGAGATATTAATGGAGGAGCGAGAGAGATGAAAGGAGAGAACAATTATTCTGACTGAAAAACACCATCATGGTCACTCTCTTTTTTTAGTTGTGACAACTAAACTGTAATTGCAGGACCAAGAGAGAAAAGTGTCCATTTCTAAACAGTGCCTCTATGGCTTATGAGGTATTGAATGTCTCAAAGTGAGCAAATTGAAATCTTCTGCATTTTTATGCAGCACTGGGCCTCAGAGACTGAGCCGGTAGAGAATAAATCCACCAACAACAGCGCTGAGAGCTCAGAGCCGTCCTCATAAAGTATTTATCTGCGCTTTTCATCCAGCAACTCCATTATCTGCTCACGCTGGCCAAAACCTGTTGACTTGTGAAGAAAAGTTCCTCTCGTTTTTGATCCTCTCTCGGTGACTCTCTCCAGCGCTCCTTCCTCTCCCTCCTCTATCTCTCCACTattgtttgttaataattaagGGATTAGACATGTTCTCTTTTATGAGCCGAATGAATTGAAGCAGACCGCTTGCTTCAACGCTGTAAAAAAGGGGGCTTAATTATCGCAAAGTCATTGGAAACGTGGAACCGCGACTTGGGTGAGAAAAAAAGACAGTTTGTCGAGAACATGTcggaaattacatttttttgttttgttttttgattgctccacacagaaacacacaatgAAACATATCTCTAAAGTCATTATTTGTATGAAAAAGTCTACAAAGTAAGTTAAATGActcttttaa
>TCONS_00020920
ATTGAGAgcgtgcatgtgtatgtgtgtgtgtgagtactaGTATGTAACACACAACCGATTCCAGCGAACACTGGAGTTGAGGAAAGACACAACTCGTAGGTGAAAGCCTGCGCGCTCATGTTATTCTAATTCCCATCAGAGGAAGAGGAATAAACTGAGAGATCGGAATAACACACACATGATGATGGCATTTTCTTCTGTTTGGAAGTATTGGGCCCCGCTTCCTCTCCTGCTGCTCCTGTACTCGCATACAGCGAGAGGGCAGGCCGTCCAGGCGGAGAACGTGACCGTGCTGGAGGGAGGAACGGCTCAGATCTCCTGCCGTCTCCAGAATTATGACGGTTCAATCGTGGTCATCCAGAACCCACGCAGACAGACGCTCTTCTTTAATGGAACACGAGCGCTGAAAGATGACCGTTTTCAGATGGTTCTTTTTACGCCGAAGCTGGTGCGCATCACGTTGACTAATGTAAGTGTGTCAGACGAGGGTGGCTACTTCTGCCAGCTCTACACCGATGATACACACCACCAGGTGGCGACGCTGTCGGTGGTGGTGCCCCCGGAGGTACCCAGCGTGGAGGTGAAAACAGAGGCGGTGGAGGGAGGAGAGGTTGAGCTCACATGTTTGTCCCTGCGGAGCAAACCTCCAGCCACACTGCGCTGGGTTCGAGACCGCAGAGAGATCCCAGACCACGTGACATCCAGTGGTCACGAGTGAACGACACTCTTCCTGAGAGGGCGGAGAAAACCGGCAACATCCTCCACATGTCTCGCCTCAGCC

Function

symbol description
cadm4 Acts upstream of or within bulbus arteriosus formation; glial cell development; and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region; immature eye; nervous system; and presumptive bulbus arteriosus. Orthologous to human CADM4 (cell adhesion molecule 4).

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0003234 bulbus arteriosus formation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function

KEGG:

id description
ko04515 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-041114-138 Acts upstream of or within bulbus arteriosus formation; glial cell development; and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in basal plate midbrain region; immature eye; nervous system; and presumptive bulbus arteriosus. Orthologous to human CADM4 (cell adhesion molecule 4).

Ensembl:

ensembl_id ENSDARG00000040291

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020918 False 2813 mRNA 0.46 9 24213078 24518027
TCONS_00020919 False 2254 mRNA 0.50 8 24213583 24518039
TCONS_00020920 True 781 processed_transcript 0.54 4 24253203 24518040

Neighbor

gene id symbol gene type direction distance location
XLOC_010688 rps19 coding downstream 17717 24188114 ~ 24195361 (-)
XLOC_010687 bcam coding downstream 77505 24030272 ~ 24135573 (-)
XLOC_010686 NA coding downstream 217749 23984776 ~ 23995329 (-)
XLOC_010685 osgin2 coding downstream 327596 23880004 ~ 23885482 (-)
XLOC_010684 rps27.2 coding downstream 412594 23788616 ~ 23800484 (-)
XLOC_010691 si:ch211-79k12.1 coding upstream 4784 24522824 ~ 24550029 (-)
XLOC_010692 si:ch211-79k12.2 coding upstream 33858 24551898 ~ 24561354 (-)
XLOC_010693 si:dkey-56f14.4 coding upstream 72498 24590538 ~ 24598042 (-)
XLOC_010694 fxyd6l coding upstream 83100 24601140 ~ 24642815 (-)
XLOC_010695 pon1 coding upstream 128560 24646600 ~ 24656265 (-)
XLOC_010626 CR392024.2 misc downstream 3317903 20895112 ~ 20895175 (-)
XLOC_010683 NA non-coding downstream 493505 23716831 ~ 23719573 (-)
XLOC_010682 CR533578.2 non-coding downstream 620479 23592464 ~ 23592599 (-)
XLOC_010681 CR533578.4 non-coding downstream 689703 23523261 ~ 23523375 (-)
XLOC_010677 CT030031.1 non-coding downstream 875482 23335528 ~ 23337596 (-)
XLOC_010703 BX539313.3 non-coding upstream 481639 24999679 ~ 25012398 (-)
XLOC_010704 NA non-coding upstream 550464 25068504 ~ 25072892 (-)
XLOC_010708 NA non-coding upstream 720210 25238250 ~ 25241068 (-)
XLOC_010710 BX571853.2 non-coding upstream 810491 25328531 ~ 25328647 (-)
XLOC_010711 BX571853.1 non-coding upstream 821896 25339936 ~ 25342126 (-)

Expression


Co-expression Network