G288685


Basic Information

Item Value
gene id G288685
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 57467 ~ 57889 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU327365
TGTGTAATGTGTCCATAGAGGCAGATAAGAGACCATGGTGGGTCCATGAGTATTGTTGATGAGGCCAGTTGCGGATGGAAACAAACTGTTTTTGTGGCTTAAGGTTTTAGTCTTGATGGACCGCATTGCCTTGAAAAGTTTGTGTCCAAGGTGAGAGGGGTCAACCACAATCTTAAAGGGTTAGTTCACCCAAAAATGAAATTTCTGTCATTAATTACTCACCCTCATGTCATCCCAAACCCGTAAGACCTTCGTTCATCTTTAGAACACAAATTAAGATATTTTTGATGAAATCTGAGGGTTTTTTTTTTTGTCCCCCATAGAAAGCAACGTAATTACTGTCTTTCAAGTTCCAGAAAAGTAGTAAAGACATCGTTAAAATAGTCCACGTGACTACAATGGTTCAACCTTAATGTTATGAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU327365 True 423 lncRNA 0.39 1 57467 57889

Neighbor

gene id symbol gene type direction distance location
CI01000075_00015676_00016381 UBA52, GM7808, UBA52.L coding upstream 41038 15676 ~ 16429 (+)
CI01000075_00001171_00013300 CERS4B coding upstream 44106 1171 ~ 13361 (+)
CI01000075_00093704_00094561 JUND coding downstream 35322 93211 ~ 94652 (+)
CI01000075_00110314_00117133 NA coding downstream 52139 110028 ~ 117267 (+)
CI01000075_00190821_00197570 CPLX4C coding downstream 132677 190566 ~ 197909 (+)
CI01000075_00216589_00224690 RX2 coding downstream 158240 216129 ~ 224858 (+)
CI01000075_00252158_00255198 NA coding downstream 194269 252158 ~ 255206 (+)
G288670 NA non-coding upstream 29672 25966 ~ 27795 (+)
G288669 NA non-coding upstream 31782 24342 ~ 25685 (+)
G288668 NA non-coding upstream 35052 20224 ~ 22415 (+)
G288686 NA non-coding downstream 40 57929 ~ 58240 (+)
G288647 NA non-coding downstream 493 58382 ~ 60789 (+)
G288649 NA non-coding downstream 4970 62859 ~ 63099 (+)
G288652 NA non-coding downstream 5836 63725 ~ 64024 (+)
G288655 NA non-coding downstream 6475 64364 ~ 64947 (+)
G288708 NA other downstream 177509 235398 ~ 237271 (+)
G288755 NA other downstream 247219 305108 ~ 316301 (+)
CI01000075_00917306_00921588 NA other downstream 859612 917306 ~ 922416 (+)
CI01000075_01364135_01365758 EEF2B, EEF2L2, EEF2.2, EF2, EEF2 other downstream 1270897 1364122 ~ 1365843 (+)
CI01000075_01404076_01444348 UNC13A other downstream 1326154 1404076 ~ 1444410 (+)

Expression


Co-expression Network