G288699


Basic Information

Item Value
gene id G288699
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 107426 ~ 107743 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU327382
TGTCAGTCAATAAGTGGGAAAAAGACACTTGCATTGCTTATTTGAAAAAGTAACTTAGATATTTTGTTGTAAATTGAAAAAGTAATGTGTTACTTTACTAGTTACTTGAAAAAGTACTCTGTTTACATAATTCAAGTTACTAATGCGTTACCCCCAACACTGATTTTTGGAAATTTTATCGACACAATGATGGTGAAACCTACACTAAAAAATGTTGGGTTAAAAACAACACAAGTTGGTCAAACTCAGTGATTGGGATGTTTTAACCCAGCGAATGGGTTGTTTTAACCCAG
>TU327385
TGTCAGTCAATAAGTGGGAAAAAGACACTTGCATTGCTTATTTGAAAAAGTAACTTAGATATTTTGTTGTAAATTGAAAAAGTAATGTGTTACTTTACTAGTTACTTGAAAAAGTACTCTGTTTACATAATTCAAGTTACTAATGCGTTACCCCCAACACTGATTTTTGGAAATTTTATCGACACAATGATGGTGAAACCTACACTAAAAAATGTTGGGTTAAAAACAACACAAGTTGGTCAAACTCAGTGATTGGGATGTTTTAACCCAGCGAATGGGTTGTTTTAACCCAGCAATTGGGTTAAATGTTTGCTCAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU327382 False 293 lncRNA 0.33 1 107426 107718
TU327385 True 318 lncRNA 0.33 1 107426 107743

Neighbor

gene id symbol gene type direction distance location
CI01000075_00093704_00094561 JUND coding upstream 12774 93211 ~ 94652 (+)
CI01000075_00015676_00016381 UBA52, GM7808, UBA52.L coding upstream 90997 15676 ~ 16429 (+)
CI01000075_00001171_00013300 CERS4B coding upstream 94065 1171 ~ 13361 (+)
CI01000075_00110314_00117133 NA coding downstream 2285 110028 ~ 117267 (+)
CI01000075_00190821_00197570 CPLX4C coding downstream 82823 190566 ~ 197909 (+)
CI01000075_00216589_00224690 RX2 coding downstream 108386 216129 ~ 224858 (+)
CI01000075_00252158_00255198 NA coding downstream 144415 252158 ~ 255206 (+)
CI01000075_00257233_00263578 RAB8A coding downstream 149490 257233 ~ 263956 (+)
G288662 NA non-coding upstream 21012 84887 ~ 86414 (+)
G288657 NA non-coding upstream 38018 68395 ~ 69408 (+)
G288655 NA non-coding upstream 42479 64364 ~ 64947 (+)
G288652 NA non-coding upstream 43402 63725 ~ 64024 (+)
G288649 NA non-coding upstream 44327 62859 ~ 63099 (+)
G288701 NA non-coding downstream 22958 130701 ~ 130970 (+)
G288694 NA non-coding downstream 41707 149450 ~ 221855 (+)
G288693 NA non-coding downstream 44363 152106 ~ 155120 (+)
G288714 NA non-coding downstream 62126 169869 ~ 172976 (+)
G288735 NA non-coding downstream 131126 238869 ~ 239082 (+)
G288708 NA other downstream 127655 235398 ~ 237271 (+)
G288755 NA other downstream 197365 305108 ~ 316301 (+)
CI01000075_00917306_00921588 NA other downstream 809758 917306 ~ 922416 (+)
CI01000075_01364135_01365758 EEF2B, EEF2L2, EEF2.2, EF2, EEF2 other downstream 1221043 1364122 ~ 1365843 (+)
CI01000075_01404076_01444348 UNC13A other downstream 1276300 1404076 ~ 1444410 (+)

Expression


Co-expression Network