G288708


Basic Information

Item Value
gene id G288708
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 235398 ~ 237271 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU327394
GACACGGATAAACCCCGAGAGCAGCAGAGCGCGAGCACGAGAGGGAGAGAGGGAGTGTTGCGGGCTTAATTCCACAAATTAACAAAATGCAAATAATTACATTATTCCCGTTTGTTTCTGCTGCATTATTGGCATTGGCAGCCAATGCAGAGGTGTACTTTAAAGAGCAGTTTCTGGATGGGGACGCCTGGAAGAGTCGATGGGTGAACTCGGAGCACAAGTCTGACTACGGGCAGTTTAAACTGACCGCTGGAAACTTCTACGGAGATGCCGAGAAAGACAAGGGGCTGCAGACCAGTCAGGATGCCCGTTTCTACGCCACCTCAGCCCGCTTCGACTCCTTTAGCAATGAGGACAAACCTCTGGTGGTCCAATTTACCGTCAAACACGAGCAGAAGATCGACTGCGGTGGTGGATATGTGAAAGTCTTCCCAGCTGATCTCAACCAGGCTGACATGCACGGAGACTCCCAGTATTACCTCATGTTCGGGCCTGATATCTGCGGCTACAGCACCAAGAAAGTTCACGTCATCTTCAACTACAAAGGCAAGAACCACCTCATCAAGAAAGAGATCAAATGCAAGGTGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU327394 True 589 TUCP 0.50 4 235398 237271

Neighbor

gene id symbol gene type direction distance location
CI01000075_00216589_00224690 RX2 coding upstream 10540 216129 ~ 224858 (+)
CI01000075_00190821_00197570 CPLX4C coding upstream 37489 190566 ~ 197909 (+)
CI01000075_00110314_00117133 NA coding upstream 118131 110028 ~ 117267 (+)
CI01000075_00093704_00094561 JUND coding upstream 140746 93211 ~ 94652 (+)
CI01000075_00015676_00016381 UBA52, GM7808, UBA52.L coding upstream 218969 15676 ~ 16429 (+)
CI01000075_00252158_00255198 NA coding downstream 14887 252158 ~ 255206 (+)
CI01000075_00257233_00263578 RAB8A coding downstream 19962 257233 ~ 263956 (+)
CI01000075_00293769_00296813 NA coding downstream 56498 293769 ~ 297085 (+)
CI01000075_00500237_00500551 NA coding downstream 262438 499709 ~ 500672 (+)
CI01000075_00548373_00566336 ACSS2L coding downstream 311102 548373 ~ 566483 (+)
G288694 NA non-coding upstream 13543 149450 ~ 221855 (+)
G288714 NA non-coding upstream 62422 169869 ~ 172976 (+)
G288693 NA non-coding upstream 80278 152106 ~ 155120 (+)
G288701 NA non-coding upstream 104428 130701 ~ 130970 (+)
G288699 NA non-coding upstream 127655 107426 ~ 107743 (+)
G288735 NA non-coding downstream 1598 238869 ~ 239082 (+)
G288711 NA non-coding downstream 7631 244902 ~ 247066 (+)
G288754 NA non-coding downstream 66707 303978 ~ 304246 (+)
G288755 NA non-coding downstream 67837 305108 ~ 316301 (+)
G288773 NA non-coding downstream 87074 324345 ~ 328337 (+)
CI01000075_00917306_00921588 NA other downstream 680230 917306 ~ 922416 (+)
CI01000075_01364135_01365758 EEF2B, EEF2L2, EEF2.2, EF2, EEF2 other downstream 1091515 1364122 ~ 1365843 (+)
CI01000075_01404076_01444348 UNC13A other downstream 1146772 1404076 ~ 1444410 (+)
G289319 NA other downstream 1362910 1600181 ~ 1605306 (+)

Expression


Co-expression Network