Gene
RNA
| Item | Value |
|---|---|
| gene id | G288764 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000075 |
| NCBI id | null |
| chromosome length | 1642109 |
| location | 374475 ~ 375671 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU327488 | True | 1197 | lncRNA | 0.39 | 1 | 374475 | 375671 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000075_00293769_00296813 | NA | coding | upstream | 77390 | 293769 ~ 297085 (+) |
| CI01000075_00257233_00263578 | RAB8A | coding | upstream | 110519 | 257233 ~ 263956 (+) |
| CI01000075_00252158_00255198 | NA | coding | upstream | 119269 | 252158 ~ 255206 (+) |
| CI01000075_00216589_00224690 | RX2 | coding | upstream | 149617 | 216129 ~ 224858 (+) |
| CI01000075_00190821_00197570 | CPLX4C | coding | upstream | 176566 | 190566 ~ 197909 (+) |
| CI01000075_00500237_00500551 | NA | coding | downstream | 124038 | 499709 ~ 500672 (+) |
| CI01000075_00548373_00566336 | ACSS2L | coding | downstream | 172702 | 548373 ~ 566483 (+) |
| CI01000075_00656048_00662437 | NAPG | coding | downstream | 280338 | 656009 ~ 663751 (+) |
| CI01000075_00682733_00683937 | NA | coding | downstream | 306812 | 682483 ~ 685507 (+) |
| CI01000075_00800884_00806063 | NA | coding | downstream | 425109 | 800780 ~ 806474 (+) |
| G288784 | NA | non-coding | upstream | 790 | 373410 ~ 373685 (+) |
| G288781 | NA | non-coding | upstream | 7179 | 367055 ~ 367296 (+) |
| G288757 | NA | non-coding | upstream | 38007 | 330504 ~ 336468 (+) |
| G288773 | NA | non-coding | upstream | 46138 | 324345 ~ 328337 (+) |
| G288755 | NA | non-coding | upstream | 58174 | 305108 ~ 316301 (+) |
| G288789 | NA | non-coding | downstream | 17462 | 393133 ~ 408348 (+) |
| G288762 | NA | non-coding | downstream | 69873 | 445544 ~ 445877 (+) |
| G288805 | NA | non-coding | downstream | 77822 | 453493 ~ 454986 (+) |
| G288793 | NA | non-coding | downstream | 98917 | 474588 ~ 479486 (+) |
| G288838 | NA | non-coding | downstream | 198614 | 574285 ~ 577188 (+) |
| G288708 | NA | other | upstream | 137204 | 235398 ~ 237271 (+) |
| CI01000075_00917306_00921588 | NA | other | downstream | 541830 | 917306 ~ 922416 (+) |
| CI01000075_01364135_01365758 | EEF2B, EEF2L2, EEF2.2, EF2, EEF2 | other | downstream | 953115 | 1364122 ~ 1365843 (+) |
| CI01000075_01404076_01444348 | UNC13A | other | downstream | 1008372 | 1404076 ~ 1444410 (+) |
| G289319 | NA | other | downstream | 1224510 | 1600181 ~ 1605306 (+) |
