G288789


Basic Information

Item Value
gene id G288789
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 393133 ~ 408348 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU327518
TATGAGTGGGATTGTACCTCCGAAGTAGGAGCCGTCAGAAAGTTTCAACCCAACAGTTCCTTTAGTAATCACGTTCACGACGCCGTGCTGAATGAAGTACATCTTCTTGCCGATGGTTCCCTCACGGATGATATAATCGGCTGGTTGGAAGACCTCGAAACGGAGCTTCGTCAGCATGGCTGTCACAAAGTTGGGTTCGGCGTTGGCGAACAGGGGCATAGAGGCCACCAGCTTACGGCAGTTGAAGTTCACGATTTCCTCTCTGAGCGGCTCGTTCAGTTCCTCTAGGATGCTTTCTTCATCAAACATCTTGCCTTGGTAACGGTGCTCATAGTAATCATGGATTTTCTGTCGGAAATCTGCCGGAAGTTTGTGGAAGGACATGTACTGCTCCACTTGTTTGTACTTTTCCTGGTACTGGCGTCGTGAGGAGTCCAGTGATTGGATGAGGGCCGTTGCATGTCCGATGAAGACAGCATAGCAGGTGGCACCAACAATCATGCTGAGCATCGTCAGCCAGATATCAGAGAGACTTTCCGGAGCTTGACGACCGTAACCAATACACAACATGTGACTCATTGCTTTAAACACAGCAAACGAGTACAGCTCACTCCACGTGTCATTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU327518 True 625 lncRNA 0.49 3 393133 408348

Neighbor

gene id symbol gene type direction distance location
CI01000075_00293769_00296813 NA coding upstream 96048 293769 ~ 297085 (+)
CI01000075_00257233_00263578 RAB8A coding upstream 129177 257233 ~ 263956 (+)
CI01000075_00252158_00255198 NA coding upstream 137927 252158 ~ 255206 (+)
CI01000075_00216589_00224690 RX2 coding upstream 168275 216129 ~ 224858 (+)
CI01000075_00190821_00197570 CPLX4C coding upstream 195224 190566 ~ 197909 (+)
CI01000075_00500237_00500551 NA coding downstream 91361 499709 ~ 500672 (+)
CI01000075_00548373_00566336 ACSS2L coding downstream 140025 548373 ~ 566483 (+)
CI01000075_00656048_00662437 NAPG coding downstream 247661 656009 ~ 663751 (+)
CI01000075_00682733_00683937 NA coding downstream 274135 682483 ~ 685507 (+)
CI01000075_00800884_00806063 NA coding downstream 392432 800780 ~ 806474 (+)
G288764 NA non-coding upstream 17462 374475 ~ 375671 (+)
G288784 NA non-coding upstream 19448 373410 ~ 373685 (+)
G288781 NA non-coding upstream 25837 367055 ~ 367296 (+)
G288757 NA non-coding upstream 56665 330504 ~ 336468 (+)
G288773 NA non-coding upstream 64796 324345 ~ 328337 (+)
G288762 NA non-coding downstream 37196 445544 ~ 445877 (+)
G288805 NA non-coding downstream 45145 453493 ~ 454986 (+)
G288793 NA non-coding downstream 66240 474588 ~ 479486 (+)
G288838 NA non-coding downstream 165937 574285 ~ 577188 (+)
G288870 NA non-coding downstream 185780 594128 ~ 600437 (+)
G288755 NA other upstream 85212 305108 ~ 316301 (+)
G288708 NA other upstream 155862 235398 ~ 237271 (+)
CI01000075_00917306_00921588 NA other downstream 509153 917306 ~ 922416 (+)
CI01000075_01364135_01365758 EEF2B, EEF2L2, EEF2.2, EF2, EEF2 other downstream 920438 1364122 ~ 1365843 (+)
CI01000075_01404076_01444348 UNC13A other downstream 975695 1404076 ~ 1444410 (+)
G289319 NA other downstream 1191833 1600181 ~ 1605306 (+)

Expression


Co-expression Network