G288793


Basic Information

Item Value
gene id G288793
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 474588 ~ 479486 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU327525
AATAAATTTTTTTGATTTCACAACCAATAAAATTTATTCAATTATATATTACAAATATGTACATCCTCATGTAACAAGTAAATATTAAAATAGACATTTTTAGAACCATCGTTCAAAAGGCATTACGTTGTAAAAAATAGGTTTCGTTGTGATCTCACATTAAAACTGTAAAAGTAAGAGTATTTTTTTTTTCTATTGAGAAACCACAACAAACTTTTCCATTTTTTTTTTTAAATGTGCGCAAGACACAAGAGACAACACGCAAGAAGTGGATGTTACAAACAGATACAACAATGGCAGAAAAGAACCAGGACCACTTCAGTAAACCTCACCACGGTACAACTTGTCAGAAAGGGACGAACCTGCGAAAGCATGCACATTATAGAAATCACAAGTCAAAAAACATCAGCTTTGATGGATGTCAAAGGGATAAAAGAGGAATTAAAAAAATAAAATAAAATAAAACTAAACGAAAAAGTATTTCAAAACACATGCTTAAAGAGTTAAGCGAACATCAACAACAACAACAACAAAGAACTTCAATGTAAAAACAACTTTGGTCCATTAAACATTAGACAAAACAAAGTTTACAATCAAAATATTTATTACTTAAACTTTTTCCGTCCTCTCAGTTTTCTTTCATTTTTTACAAGTTAAAAACAATAATTACATGGCTATTTACAAATGCACAATCAGTATGTATAAAATAAGTTAAAAAATGAGGAGCACAATCTATACATTATCTATGAACACTCACTGTAGAAACATGTTGGATTGAGATCTCTTTCATAACAGAGGACGAAAATCTCTCTTGCTTTCCGATGGTGGTCTTTACCCTCGGGAGGCTGGTTTTCCGACACTCCTCTTTGTTGACCCACGGTCTACCGTTCTGGATAGTGGACCTCAGGGTTAAGTGCGTTTTAGTATAGTCTATAGGAGCCGATCTGATGCCCATGTGGTGAAGTGCGTTTGGACCGGGTGTGTGTGGTCGAACCAGAACAAGAACAGCGAACACAGACTGAACCGGTGATGACAGTTAGCCTGGAAGTGCAGCACTCGTTTGTGTTATTTTTCTTTTTTTACTTCTTTTATTATAAATCTGGAGAGTCTGTGACAAACAACATACATGCGCGCACACACACACACACACACACACACACACACACCTCCAAATCAAGTGCTTCGTGTTTATCACCCTACGCACGTCTTGACATCATCACATGTCATGGTCCGACAGCTACGAAATGTTATGCCGTCTCTTTATCTCGTCACCAGGTCATATCGGTGTCAGGTCAAAGTCGTCATTGACCTCTACGAGAGGGATGTAGAATTCGGGAATCTCGAAAATGCTGGTAGACTTGTAAGTGGCGGGATCCAATTCCTGCAGTTTTAGCTGCCACTCCAGGCGCTGAACTGCGTTTAACGCCGCTGCTTCATGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU327525 True 1441 lncRNA 0.38 2 474588 479486

Neighbor

gene id symbol gene type direction distance location
CI01000075_00293769_00296813 NA coding upstream 177503 293769 ~ 297085 (+)
CI01000075_00257233_00263578 RAB8A coding upstream 210632 257233 ~ 263956 (+)
CI01000075_00252158_00255198 NA coding upstream 219382 252158 ~ 255206 (+)
CI01000075_00216589_00224690 RX2 coding upstream 249730 216129 ~ 224858 (+)
CI01000075_00190821_00197570 CPLX4C coding upstream 276679 190566 ~ 197909 (+)
CI01000075_00500237_00500551 NA coding downstream 20223 499709 ~ 500672 (+)
CI01000075_00548373_00566336 ACSS2L coding downstream 68887 548373 ~ 566483 (+)
CI01000075_00656048_00662437 NAPG coding downstream 176523 656009 ~ 663751 (+)
CI01000075_00682733_00683937 NA coding downstream 202997 682483 ~ 685507 (+)
CI01000075_00800884_00806063 NA coding downstream 321294 800780 ~ 806474 (+)
G288805 NA non-coding upstream 19602 453493 ~ 454986 (+)
G288762 NA non-coding upstream 28711 445544 ~ 445877 (+)
G288789 NA non-coding upstream 66240 393133 ~ 408348 (+)
G288764 NA non-coding upstream 98917 374475 ~ 375671 (+)
G288784 NA non-coding upstream 100903 373410 ~ 373685 (+)
G288838 NA non-coding downstream 94799 574285 ~ 577188 (+)
G288870 NA non-coding downstream 114642 594128 ~ 600437 (+)
G288905 NA non-coding downstream 247085 726571 ~ 726815 (+)
G288918 NA non-coding downstream 309285 788771 ~ 826689 (+)
G288755 NA other upstream 166667 305108 ~ 316301 (+)
G288708 NA other upstream 237317 235398 ~ 237271 (+)
CI01000075_00917306_00921588 NA other downstream 438015 917306 ~ 922416 (+)
CI01000075_01364135_01365758 EEF2B, EEF2L2, EEF2.2, EF2, EEF2 other downstream 849300 1364122 ~ 1365843 (+)
CI01000075_01404076_01444348 UNC13A other downstream 904557 1404076 ~ 1444410 (+)
G289319 NA other downstream 1120695 1600181 ~ 1605306 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_016948 NA non-coding NC_007113.7 CM002886.2 54783824 ~ 54787578 (-)
bowfin (Amia calva) AMCG00019269 ankrd12 coding CM030124.1 CM030124.1 11821023 ~ 11838760 (+)