G288870


Basic Information

Item Value
gene id G288870
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 594128 ~ 600437 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU327608
GGGGTCCATTAACTGTTTGATTACTGACATTTTTCAAAATATCTTGTGTTTGGAACAACTTGAGGGTGAGTAAATAATGACATTTTTGGGTGAACTATCCCTTTAAGAGGAATCACTATATTTGAGGTCACTTCCTGAGATTTGGGTGCACACTTTGTCTTCCCTTCCCATCTCTCCATCACCCTGGTCGATAACAATGCCCAGTTCTGGAATGTTCTCCAATCGATCATACTCAGCATGTGCGCCCTCATCCACGCCATCTGTCCTGCGGCCGAGCCTCCAGTGCATAAGGATCCATCGCAGCTTCATGTAGACAATCACCATATTGTGGCGGAACAACCTCACTTCCTGTTGTAGCAGGACTCTTTCCTGCGGCCATGTTGGTTCATGAGATTGAAGTCCCTGCAGCTCGAGGCCTCGCCGCACCTCTGCACGCCTCCTCTCCTCCTGTCCAGCTCTCATTCTCCTGTCATGGTCCAGGCGTAGTTGTATCTCTCTGGTAGGCGTTCCCATCTCAGGCAGAGCTGGCTCACGAAACTGGACCCCAGCAGAACACAGAACACCAGTCTCAAAATCCCAGCACTTTCAAGAGAGACACCATCAGTTTCATGCATCAGTGACATGTATCAAGGCAGAGGTGAGCTGATTATTTCAGTATCTTCTCTTTCTAGATTCTATCTAACTGTTACTGTTTCATGGTTGGTTAAGGAGGAAAATATGAAATAAGCTTTTATGTTTATAGTAGCAATGAATAAAAATATATTAGGACACTATTCTTATTGTAACTGTTCCATAATAAATTCTCCAGATCTCTGGTGTCAAATGCAAGAGAATTTATTTAGAGGCTCATAATTGATTCAGATTCATTTTTATGGTGAAGAAATATTTAATCTGTGCTTTGTGTGCTGCTGTTTGTAAGTTCTAACAAATGTCTTAAAGGGGTCATGACATGCCTTGATCTTTTGACATAAGAGGTCTTTTTACCATTAAAACATCCTGCAAGATTCATAGCTTAAAACATCCTCCTCATTATAAACAAAGGATTTATTAATCAAGCTCCAAAGACAGCTCAGTTTGATTTTGCGAGATCTGTGACGTCACACGAGCGAATACATTTGCATATGCCTGCCACACCATAGGCCTGGCGTTCAGTCGCTTAATGGCGGACACTTGCCTACTCTGGATGTGAGCGCCGCTTTAAAAGCAAATAGAACCCATTATAATCAGTGACGCTGTCTACACTGATCCAGTATACAGATGCGTGTTCTGTTTCTGTCAACAGCAGGACAAAAGAAAGAGTGAAAGAACGTTCACTTTGAACAGCCCATTTGCGTCTCTGTACAAATGTCTCGGATTGCATCGGAGAATGTTTATGTTTGTTCGGAGCATTTTGTTTTGTAAACGAGGCACAGTGTAATGGAGAGTTCACAAAGAAACTTTTGTTGAAAGATGAAGCAGCTGACTGTATTGGATCTGACAGCAGCTGCATCACAAACTGTAAGTAAACGATTTCATTTTAATGATCTAAGTGCATGGTCTGAAGCAGGTGCAGGTGCACTTAGGGCGTGTGAAAAATCCACTTTTACTAGTTTAACGATGGAAAAAATGGTCCAAAAGGGTTGTACCATGTCTCTTAATGAGTCATGGGTGTGTTTTGGGCATAACATGCAATAAACCAATCAGAGTCTCATCTCCCATTCCCTTTAAAAGCCAGGAGCACTTGCACCATGGTGGATTAGCTATTTACATGGCGGAATATAGACACCTTCAACCCGACGAACCAGTTTAAATACATGTGTGTATTGCCACGATTGGTTTAATAATTAGCCAATTTCATTCGTCATTACTGCAAATAGGTAATTCTGATTCATGCAATGGCTATCCATTATGAAATGTAGGCATTTTTATCTTTATGTACACAATAATAATCTTTTACACTGTATTCCTTTTATTTTTAATATTTGGCATGTTTGTGTGCTGCTGCGTGTCCCTGTGTGTGTAAAAACCAGAGTGTACACGCGTTGTGCACCCACATATAGGCGCATATTATTAACATGCACTTTAAATAACAACAACAAAAAAATTCTGCACCATTGACTTTAGAAATACCATTGACGCAGCAACACGCCAACAATGCACCTGAACACACCTTGTTTTCAGACCAGCACGCCCATGGGTGAACAGATGGGCACGAGTGCATTTGCTATTTAAACAATGTGACGCAGGACGTGAAAATGATAACTGCGTCGGGCTGAAACTACCAAAAAACACTTGCGTTGCGTGTCACATCTGGCGTCACATCACAAAACTTAATTAACATTATGAGTAAACCTCAAGGAACATATTAAAATAATAAAACAAATCCATGTCATGACCCCTTTAATTGTAAGAGTGAAGATTCACATACATAAATATCAAAGATATATAATAAGCATATGCTGCCTTCAAGTCACTGTATTAATGAACGAGCGCATGGGAACGGCAACACCAGGTCATAATTACTAGTGAGAAACACTTTTGTTTTTAAGCCCTGAATTTTGAGGGTGAGTCAGTTAAAAAATCGTATTTAACATACTAAGCCCCAAATGGGCTTCTTCTTTTTTTTTTTTTTTTTCTGTGCTGATTTTAGAGGGAAAATGCTAAATTACACTTACTGGTAACTGAAAGCTCAAGTTGCATAACTAATCCACATCCTTTGTTCTTTTAGTTTGTTACAATAGTGCTAAAAACATTTTTTCTCTTTGTGAGTAGATGGAAAAAGTGAGAAAATTACCTGCATCCATTTGTTCCAGTCAAAATTACTAAAAAACTACTGTACATAAGATTTCTGCACTCAAAATTATAGGGAACTTCCCAGAAGGACTTGAAGGCAAAAATTTGAAATATTGCATATCGCGAGCTGCTAAATACCTTTCTTTCCGCAGTTTTGGTTAGCCTGTACAGTTTACGCTGAGCAGCAGCACATAAATTGAAGCTTAGACAACCATATAGACACACAACAAATTAAATGCAAATGCATATTAACTGATGACATGATTAACACACATACAGCCGTTATTTTCATGTTACAAACAGTCACAAATTGAACAGAACATCAAAGCTCCTGCATGCGTGAGAGGATGGTGTCGTAATTCATGACAAACCAGTGTGATTTTACAGAAACAGCAGTGGTTGTGAGTGGAGTGAGACGAAACCAAAAGAATCACTGTGAAACAATGGTGTGAATTAAATGATTCAAGTGAACGAACTGCTCTCGGCTCTATCTAGGGTTTCATTAAGTTGCATCAGATGAATGAACGCTGTTGTTTTTGGTCTAATAACCTGGTATAAAATAACTGAAAGTGATATTTTATGACAACTGGCTCTCTTCCATTCAGTTTTATTACATTAAGGATTTATTACATTTTATTAAATTAAATAAAGATATACAAGCTAGGGAGAATTGATATTCATTCTGAAGTGTTTCGTAGGCTTTCCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU327608 True 3480 lncRNA 0.39 3 594128 600437

Neighbor

gene id symbol gene type direction distance location
CI01000075_00548373_00566336 ACSS2L coding upstream 27645 548373 ~ 566483 (+)
CI01000075_00500237_00500551 NA coding upstream 93456 499709 ~ 500672 (+)
CI01000075_00293769_00296813 NA coding upstream 297043 293769 ~ 297085 (+)
CI01000075_00257233_00263578 RAB8A coding upstream 330172 257233 ~ 263956 (+)
CI01000075_00252158_00255198 NA coding upstream 338922 252158 ~ 255206 (+)
CI01000075_00656048_00662437 NAPG coding downstream 55572 656009 ~ 663751 (+)
CI01000075_00682733_00683937 NA coding downstream 82046 682483 ~ 685507 (+)
CI01000075_00800884_00806063 NA coding downstream 200343 800780 ~ 806474 (+)
CI01000075_00821649_00821906 NA coding downstream 221212 821498 ~ 825595 (+)
CI01000075_00864628_00867240 NA coding downstream 263592 864029 ~ 868077 (+)
G288838 NA non-coding upstream 16940 574285 ~ 577188 (+)
G288793 NA non-coding upstream 114642 474588 ~ 479486 (+)
G288805 NA non-coding upstream 139142 453493 ~ 454986 (+)
G288762 NA non-coding upstream 148251 445544 ~ 445877 (+)
G288789 NA non-coding upstream 185780 393133 ~ 408348 (+)
G288905 NA non-coding downstream 126134 726571 ~ 726815 (+)
G288918 NA non-coding downstream 188334 788771 ~ 826689 (+)
G288948 NA non-coding downstream 271961 872398 ~ 872855 (+)
G288755 NA other upstream 286207 305108 ~ 316301 (+)
G288708 NA other upstream 356857 235398 ~ 237271 (+)
CI01000075_00917306_00921588 NA other downstream 317064 917306 ~ 922416 (+)
CI01000075_01364135_01365758 EEF2B, EEF2L2, EEF2.2, EF2, EEF2 other downstream 728349 1364122 ~ 1365843 (+)
CI01000075_01404076_01444348 UNC13A other downstream 783606 1404076 ~ 1444410 (+)
G289319 NA other downstream 999744 1600181 ~ 1605306 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G79384 NA non-coding NC_053118.1 CM020915.1 38373827 ~ 38379212 (+)