G289390


Basic Information

Item Value
gene id G289390
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000075
NCBI id null
chromosome length 1642109
location 1494413 ~ 1503903 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU328220
GCCTTTATGTATAACGCATTATAGTGGTATTCATAGTGTACGATATAATGCATTACATCTTTTCATAAATAATTGTAAACAAAGTTAAAATGCATTATAGTCTTTGCTGATTTCTTGTTACAGCAGTAATTGGTTGTTTCATGTGTTTGGTGTATCAATGAGGAGGAAAGTATTAGAACTGTGATTATAATCATTATAAGATTCATTATAAGGCATTATTAATGCCTTTTATAATGCATTATATATAAAGTCTTAAAGTAAAGTTTTTTTGCACTGTGACATTATTTTCATGACATACTGTAACTCCAATTGAATTCAAATCAGCATAATTTGAAAGCAGTACAACAAATATTACTATGATGCACAAATACTCACTATTTAAATAGTAAATCATTATTTTTCCAGGAAAAAATGTATTTAATTCTCATGAAAATAATGTCACAATGCAAATAATCGAATGCAAAATATATGATCTGTTTTGTTTCTTTTGATTTTGGGGTTAAATGTGACCTGGACATGTTCTGAACAGGTTTTGTGAGATCAAGAATATCCTCTGTAAAGCTGTAAAGAGTGTGTGTGTGTGTGTGTTTTGATGTTAGATATTAGTTTATGCGTTCGAATAATCAAAGTCTCATTTATATTTTTAAAGAGTAGTGTCTTGTGTTATGTGCTTACAAATTTAATTTCTTAAACTGCTGACCCTGTTACCTTGCTAATAAATAGTTGCGGATGGATGGATGGATGAATGTGTTTTGCCTCAAAGTTTTTGGAAGTGGGAAAATAACCAGACTAGAAAGTTCCACCGGTGATAATCTCTGGTCACCGTCAGAATGTACTGGGCTATGATGGGATTAGGGTCAGGACAGTAAACACACACACACACACAGCTTCTGATACTAAAACAGTGTTTGATCAAACTGGTTCAGGTTCATTATGCGTAATTTAGATTAGAAAGCACTCCTAATATAATAAAATGATTAACAGCATTATAATGCAATAGATTTTCAAGAACATACTTATTTTCATTTCATGCATTATTTTAAATATTGCCTTAGAACGGCATCTAAACGTACATCAGCACATTTACCAGGTCAGTTTTACTTCAGATCTTCTGCCTGCTCACATCTCTTCGTCTGACACACTAATCAACCTTAAAATGAAAGTGAACCTGCTTAGTGCTTCACTAACAGCCTGGGCTGAGTTATAGAGAAATCAGAGAAAAAGAACCGAGAGTTTGAGTGGTTAAATACAGCTTTGAGAAATGAACGTGTCCTGATGTGACCACACACACAACGGTAAATCAAGAGCACTTAAAGGTCTAGACCAGCCAAATAAAACATTTTATCACACGAGCTTCACTGGGAAATCCACCTGTTTTGACTTCTGAAACTCAATCTAGTAGCAGTTTCACAATGATTAATCCTGTAAAATGTGTCAAAACACTTATGACATTTGCAGTGTGAGTGTCTATATAGTAAAACATGTCACGGTGGAAAGTTTTCACAATACACTTAAAAAAAAAAAACTACAAAAGACTACCACAGTACAGTGATGGTGTTGGATAGTAAAAGCATAATACATTACATAACTATATATGATACTGAAATATTATCATATACAGTATCGTTGTATTTGCCAAGGTACATTACTATGGTACTTCAACAAAAACATGATATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU328220 True 1677 lncRNA 0.33 2 1494413 1503903

Neighbor

gene id symbol gene type direction distance location
CI01000075_01466937_01467865 NA coding upstream 26352 1466937 ~ 1468061 (+)
CI01000075_01451280_01460210 RAB11B.2.L, RB11B, RAB11B.1.S, RAB11B.2, RAB11B.1, RAB11B, RAB11BA, RAB11BB coding upstream 32777 1451280 ~ 1461636 (+)
CI01000075_01404076_01444348 UNC13A coding upstream 50003 1404076 ~ 1444410 (+)
CI01000075_01364135_01365758 EEF2B, EEF2L2, EEF2.2, EF2, EEF2 coding upstream 128570 1364122 ~ 1365843 (+)
CI01000075_01159479_01160597 KLF2B coding upstream 333750 1159479 ~ 1160663 (+)
CI01000075_01506719_01516006 NA coding downstream 2307 1505543 ~ 1516053 (+)
CI01000075_01526289_01529484 POLR2E, POLR2EA, POLR2EB coding downstream 22338 1526241 ~ 1529656 (+)
CI01000075_01609077_01609286 NA coding downstream 105174 1609077 ~ 1610221 (+)
G289340 NA non-coding upstream 28022 1465437 ~ 1466391 (+)
G289379 NA non-coding upstream 47156 1447045 ~ 1447257 (+)
G289378 NA non-coding upstream 48545 1445490 ~ 1445868 (+)
G289377 NA non-coding upstream 49103 1445106 ~ 1445310 (+)
G289367 NA non-coding upstream 124872 1369117 ~ 1369541 (+)
G289397 NA non-coding downstream 12421 1516324 ~ 1516605 (+)
G289329 NA non-coding downstream 15087 1518990 ~ 1524862 (+)
G289398 NA non-coding downstream 26450 1530353 ~ 1530598 (+)
G289401 NA non-coding downstream 39760 1543663 ~ 1545087 (+)
G289402 NA non-coding downstream 41580 1545483 ~ 1547588 (+)
CI01000075_00917306_00921588 NA other upstream 571997 917306 ~ 922416 (+)
G288755 NA other upstream 1186492 305108 ~ 316301 (+)
G288708 NA other upstream 1257142 235398 ~ 237271 (+)
G289319 NA other downstream 96278 1600181 ~ 1605306 (+)

Expression


Co-expression Network