XLOC_010707 (LRATD2)


Basic Information

Item Value
gene id XLOC_010707
gene name LRATD2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25231963 ~ 25233515 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020953
GCCCGTGCCTTGTGTAAACATCCCCGTGCCCGCTACTATTTCACACAGAGCTCTGCTACTGCCTCAGCCAGAACTTCAAAGAGTGTCGGACGCCGTCCATCAcgcacaaacagaggaaataacTCTTCAAACCCCCTCATTTCTCAACAAGAGACGCTCGCCGTCGGACTTCAGCTGTAGTGTCGGATGGGCTTCCCCCGTCCCCGGCTCGCACCAGGAAGTGAGCAGGTGAGACGCACCTGTTCAAAACGCAGACCGAAACTCAACATAATCTAAACTCCGGCAAACAATTTCGACAAATGTACGATATGCTACATAAATACTCCTCGCGGACATTCAGAAAACATGGACTTTGACCTGAACTGGGCTCCAAAGCCGGATTACGTGTTGCGTTTTTGAAATCTCCTCGACCTGTACAGGTGGGACGCGGAACGAGTGTCGGACGCTGTTATGGGGAATCAAGTGGAGAAGCTCACACACTTGAATTACAATGAATTACCGACAGCTGACCCTAATGGATTTGACCCAGAGGACGACGCTCCGCGGATCGGCGTCTCTTATATTTTCTCCGCCGATGACGACGAGCAGGAGGAGAACATGGACGAGACGGAGAATGAAGATGTCAAACATTACGACTGCCGGAACGAGCTGGAGTGCGCCGTGTATTATCGCGACGAGGTCATATACGAGCGGAATAGTCGGTTTGGTGAAGTGGGCACGCTGTCGCGCGAGAACTTGGCGAACAAGTGCAAAGCCGGCGACCTGGTGGAGTTCGTGGCCATCGGTCAGTTCCCGCACTGGGCGGTGTGTGTCGGCGAGCTACAGGTGGTTCATTTGCACAGAAACGAGATCAAATGCGACTTTCTTTTGGACGCGAGTCAAGGTAAAAGGGGCAGAATCGTGAACGAGCTGTATAAGTTTCGCGCGCTGAGCTCGGACGCGGTGGTCCAGAATGCCATGGAGCAGGTGGGCTTGAAGGAGCGGGACGTTTGCTGGAAGAACTCGGAGTGCTTCGCCGCTTGGTGCAGGTTTGGAAAACGCGAGTTTAAAGTCGGAGGCGAAATACGCATCGGTAAACAGCCGTACAAGATGAAACTGCAGCTCTCCGAGAAGAAAAGTCACGTTTTGGACTTTCAAAGTTTAGAGGATCTGATCGTGGAAAAGAGGAAAAACGACCAAATGGGAAGGGAAGCTGTCATTCAGGAGCTGGAGAATCATTTAAACTGCGCTGAAGAGCCTGGGGATGATTACAACTGTAACTGATGAATCAAAGAGGGAGGTTTCTCTGGTCTTGATGGAGGATATGGGTGTTATTTAAATCACCTCCAGCACAGCGGCTGTGGTGCAGTTTCATCAGAGTTTtctgacaggagcacttttatAAATTGAACAAGTTTGAACAAGCTTGTTTTCAGTGACAAGGACACGATCATTCCCTCACTTTGTTGTATTCACATACAAGGGAACCGTTTATAAAAGCCTATCTCACTTTATTTGAGAACTATGTATTCCCTTGGCACATTATTTCAATAAACCTGAGTATTTTttcttaa

Function

symbol description
lratd2 Located in cytoplasm and plasma membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000040280

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020953 True 1553 mRNA 0.49 1 25231963 25233515

Neighbor

gene id symbol gene type direction distance location
XLOC_010706 BX571853.3 coding downstream 25915 25174628 ~ 25206048 (-)
XLOC_010705 prss1 coding downstream 146636 25080764 ~ 25085327 (-)
XLOC_010704 NA coding downstream 159071 25068504 ~ 25072892 (-)
XLOC_010703 BX539313.3 coding downstream 219565 24999679 ~ 25012398 (-)
XLOC_010702 has1 coding downstream 286626 24940377 ~ 24945337 (-)
XLOC_010708 NA coding upstream 4735 25238250 ~ 25241068 (-)
XLOC_010709 prelid3a coding upstream 42252 25275767 ~ 25285582 (-)
XLOC_010710 BX571853.2 coding upstream 95016 25328531 ~ 25328647 (-)
XLOC_010711 BX571853.1 coding upstream 106421 25339936 ~ 25342126 (-)
XLOC_010712 rbfa coding upstream 130798 25364313 ~ 25368048 (-)
XLOC_010626 CR392024.2 misc downstream 4336788 20895112 ~ 20895175 (-)
XLOC_010690 CR854851.1 non-coding downstream 837500 24394346 ~ 24394463 (-)
XLOC_010686 NA non-coding downstream 1236634 23984776 ~ 23995329 (-)
XLOC_010683 NA non-coding downstream 1512390 23716831 ~ 23719573 (-)
XLOC_010732 NA non-coding upstream 1138182 26371697 ~ 26379456 (-)
XLOC_010734 CR391910.2 non-coding upstream 1269578 26503093 ~ 26507404 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05769594_05773182 NA coding CI01000027 null 5769252 ~ 5773182 (-)