XLOC_010708


Basic Information

Item Value
gene id XLOC_010708
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25238250 ~ 25241068 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00022168
tCTGTTTTGGAATGATGGGAAAAACATTTGAATATCCCTCATATTATATCCATATATTCCCCATTTGGCTTTGTACCCAGATTTCCCCACTTAAATTAGGAGAATTGGATTGCAGGAGTGGAGTTTTAAAGGTTTGTTGGACTTTTCAGGAATGCTTACCTCTGAAATTGTGAAATCATTTGAACAAATTAGAACAGAGTTTGATATTCCCTCtgaagacttttaaaaaatataacattttatagaGTCTCTATTAAAGCAAAAccagttttgttttaaattatcgGAACTAGAAGAAACCATGCTCTCAGTCAGTTTTTTCAAGagctcatttttaaattaaatgcctTATTAGTTTACTCCTATTACTCAGTTTATAATTCCTTGAAACCATTATGGCAACAGGACCTATTTAATCCAATTCAGcttcatttgtatagcgcttttacaatgtagattgtgtcaaagcagcttcacataaatggtcatagtaactggatcagggtagttcagtttttagtgtttaagttcagtttagtttagctcagttcagtgtggtttgaatcattactgagagtccaaacactgaagagcaaattcatcgatgagtagcttttctgatcctgaaccatgcaagccagtggcgacagcggagagggaaaaaaaattcaccaataggagagtgaagaaaaaaaaccttgagagaaccagactcagttcggcacgaccattttaatttctctgctggccaaaagtcttgtgcagagctgcagtttcagcagtggaggctggaagctggcctcagcgaagactcgtctgtccctggagcgtcactggaatcaggatacggcctggtcccggatatggacaccttgggatcatctcgttgctggtcttggatccaatcagtgactccgcataatctgaggacctcgagATGGGTattcccaggtggaaatggagaataaagagaataattagcatagctgctgttcatagtgtatataaacaagatgcagaaacttgtgtggaaacccgctaagtgatgcattgagtgtatgccttactaaacagataggtctttaatctagttttgaactgagagtgtGTGTcagagcctcggacattatcaggaaggctattccagaccTATAAATTCTGTTTAATTGGTCCAAGATCTGTAATGgcatttttccaaaatatacCTCAATTTCCGTAAATGaacaaaattgtaaaattttcGACAGAATATATTTTATGCTTGTTCATCTGCATAATATGTTTCTAGCTTGTTCCGACCTCTGTTTAGGTGCAAAACTTGTAAGGACACATTATTGTCATGTATTTTAGTCTACCATTTTGGAGAGGGGTTCATTCTGCAATCCAGGAGATAattggtaaacaatttattttctcCCCCTCACTTTTTGTTCAATGACATTCCTGAAGACCTTTTTGACTCAGACCTCAAACCTCTGTTTACGACTCTTACATTTCCGGCTAAGAAATGTATATTACTAAAATGGTCTACTTCTCAAATTCCAACTATTTTCATATGGATTTCTCAGTTGTCAGTCTTTCTTCCTTTGTAAAAATTAACCTATAATCTCAATCACTAACAGGACATATTCAGGAGACTTTGGGAACCTCTCCAATCCTTTCTACATAAACTATGaaattttacattaaacataaaacttgtcaaacacatttaatatttaacattaaatagaaaaagtaaattttaattaaaaaagttattgACAGAGCAGGATTTTAGTGTTGTTTTGGCATCACTGGAGAACTATTGaagttttttcattcttttaattaggtattatagttttaatttgaattatatttagtttacttattttattcatttaattttttttacacatttaatttcAGTCAACTAAAACTGACCCGATACTATTTAATACCCACTGCCTGGTGTATAACTTtgtttgactttattaatcccaaagAGAAATTCACATGTCACTGCAGAACTCTCCATACTATAagatagataaaataaatgacttttaataTACAATCTGACCACTGTTGGTAAAAAATATTTCCTGCATCTTTCTCTGTAACACCGGGGCTGAATTAATCTTGCACTTAAAGAGCTTGCACATGCTTGGACCATATCAGAAAGGAGATGATTATCATGGTTCATCATACTGACAAATTTGTCCATCATACGATCATGTGCAATCTCTTCTACAGTGGGTAGTACACACCCCACAACACAACCTGCCCTTTTTATCTGTGATACAGTATGTGAGCATCATTTTAGTTGAAATGTCATGCTCCTCTAGAGGTCAGTGCAGCTCTAATGATCATTACTGTATGAACTGGAATAGAAAATATATTCTGATAGTCATCATGACACATAGGaattacctttaaacaaaataattcttTCACAGTGATCAGTAGCACATTATTGATCAGTAACCCTAAAAATGGTCTCATGTTCTTACTTTTTTTCAGCTAACATCCAGTCTACTGAGAGTCAAGAcagctatttattaatttacaggaaaaaaatcaAAGATCTTGTAAGACAACAGAACTTCCATACAATAACGTTGGCATACCTTTGTGTACCTATTTGGGTCACCTGACAGTCTTCTCTGCCTTTATTAGTACTATTTCTCTTTCTGCAGCCAGTTTGGGCTTCATCGGTGtgacacaaacatgcacacgccGCGCACCTTCAGCAATAACACACACCTTTGATGGAGAGCAGTTGCCTTTGGAAACctagagagaaagaaagaagggTCTTAAGGGGCTTTACTATT

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0044464 obsolete cell part cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00022168 True 2819 lncRNA 0.36 1 25238250 25241068

Neighbor

gene id symbol gene type direction distance location
XLOC_010707 LRATD2 coding downstream 4735 25231963 ~ 25233515 (-)
XLOC_010706 BX571853.3 coding downstream 32202 25174628 ~ 25206048 (-)
XLOC_010705 prss1 coding downstream 152923 25080764 ~ 25085327 (-)
XLOC_010704 NA coding downstream 165358 25068504 ~ 25072892 (-)
XLOC_010703 BX539313.3 coding downstream 225852 24999679 ~ 25012398 (-)
XLOC_010709 prelid3a coding upstream 34699 25275767 ~ 25285582 (-)
XLOC_010710 BX571853.2 coding upstream 87463 25328531 ~ 25328647 (-)
XLOC_010711 BX571853.1 coding upstream 98868 25339936 ~ 25342126 (-)
XLOC_010712 rbfa coding upstream 123245 25364313 ~ 25368048 (-)
XLOC_010713 adnp2a coding upstream 130585 25371653 ~ 25380969 (-)
XLOC_010626 CR392024.2 misc downstream 4343075 20895112 ~ 20895175 (-)
XLOC_010690 CR854851.1 non-coding downstream 843787 24394346 ~ 24394463 (-)
XLOC_010686 NA non-coding downstream 1242921 23984776 ~ 23995329 (-)
XLOC_010683 NA non-coding downstream 1518677 23716831 ~ 23719573 (-)
XLOC_010732 NA non-coding upstream 1130629 26371697 ~ 26379456 (-)
XLOC_010734 CR391910.2 non-coding upstream 1262025 26503093 ~ 26507404 (-)
XLOC_010737 CR391910.3 non-coding upstream 1359932 26601000 ~ 26601433 (-)

Expression


Co-expression Network