XLOC_010709 (prelid3a)


Basic Information

Item Value
gene id XLOC_010709
gene name prelid3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25275767 ~ 25285582 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020954
GATGAGATGAGGAGCATCCCAGAGCCGGTAAAATGGGAGCGGagcttgaaaatatgattgtatGAGATGTACAGTCCACAGTTGTCTGGAGGCACGTATAAACTGTGGCAAACATGAAGATTTGGAGCACGGAACACATATTCAGCTACCCCTGGGAGACTGTGATCAAAGCAGCTATGAGGAAGTATCCTAATCCAATGAACCCTAGTGTTGTTGGCGTGGATGTGCTGGACAGGAACCTGGACACACATGGACGTCTGCACAGCCATCGGCTCCTCAGCACAGAGTGGGGTCTTCCAGGGGTCGTCAAAGCGatTTTAGGGACAAGTCGAACTGTCACGTATGTAAAAGAACATTCTATTGTCGACcccgaagaaaaaaaaatggagctTTGCTCAACAAACATAACCCTAACCAATTTAATATCAGTTGATGAAAGGCTTGTCTACAGGCCTCATCCAGACAATCCAGAAGTCACTGTATTAACCCAGGAAGCAATCATCACGGTGAAGGGTGTCAGTCTGAGCAGCTACCTTGAAGGACTGATGGCTTTAACTATGTCAGCCAATGCAAGAAAGGGATGGGATGCCATTGAATGGATCATTCAGAACTCTGAAAGGGAGAAATGTCCTTTTGTGTGACCTGTATTGAACAGAGCCCACAAATGAGGAACTCATGATCAGCAGCAGCTCTGGAAGCACATCTGACTTCACCCAACTCTCTTTCTGTTGATGTTTGCATTCAAAGGTAGTCCAGTTGTTTCTGCATGCCATTGGGTTCAAGACCTCATGAAGTTGCACTATTACAGACAAAACCGTATAGAGTTTTGAATGTCGctacaaaatgtaaaatgcaaatgCACTGCTCTGACTACCTCTCATTTTAGTTCTTTTAAAGTCATAACAGGGGTCCTGGTACCAGTTGGATGTTTGTAATCCAGTACTTTTAAATTCAAATCATGAAAAAATGaacaattgtaattatttttattatgatgtcATGAAAGGGAATGTGATTTAATCTTTGTTTGAAGTTTGCATGAGTAGTCTAAAAGTGTATTTAACACGAAGTCTAACTCAAATGTGTAGAACAGGTCAAAAAGTCACTTTGTAGAGTTTATTTTGGAAGAAAGTGCTATATTTAAAAGGGGCTTGTTATGCTGCTTTATAATGTACACATTATTAAGATTTCAGCTTGTTTGtaagtctgtttgtttgtttagtagaGAGATATGGGCGAATGCTTATTTATGATTTAggctaaaaaatgtcatttattatttta
>TCONS_00020955
ATGAAGATTTGGAGCACGGAACACATATTCAGCTACCCCTGGGAGACTGTGATCAAAGCAGCTATGAGGAAGTATCCTAATCCAATGAACCCTAGTGTTGTTGGCGTGGATGTGCTGGACAGGAACCTGGACACACATGGACGTCTGCACAGCCATCGGCTCCTCAGCACAGAGTGGGGTCTTCCAGGGGTCGTCAAAGCGatTTTAGGGACAAGTCGAACTGTCACGTATGTAAAAGAACATTCTATTGTCGACcccgaagaaaaaaaaatggagctTTGCTCAACAAACATAACCCTAACCAATTTAATATCAGTTGATGAAAGGCTTGTCTACAGGCCTCATCCAGACAATCCAGAAGTCACTGTATTAACCCAGGAAGCAATCATCACGGTGAAGGGTGTCAGTCTGAGCAGCTACCTTGAAGGACTGATGGCTTTAACTATGTCAGCCAATGCAAGAAAGGGATGGGATGCCATTGAATGGATCATTCAGAACTCTGAAAGGGAGAAATGTCCTTTTGTGTGACCTGTATTGAACAG
>TCONS_00020956
ATGAAGATTTGGAGCACGGAACACATATTCAGCTACCCCTGGGAGACTGTGATCAAAGCAGCTATGAGGAAGTATCCTAATCCAATGAACCCTAGTGTTGTTGGCGTGGATGTGCTGGACAGGAACCTGGACACACATGGACGTCTGCACAGCCATCGGCTCCTCAGCACAGAGTGGGGTCTTCCAGGGGTCGTCAAAGCGatTTTAGGGACAAGTCGAACTGTCACGTATGTAAAAGAACATTCTATTGTCGACcccgaagaaaaaaaaatggagctTTGCTCAACAAACATAACCCTAACCAATTTAATATCAGTTGATGAAAGGCTTGTCTACAGGCCTCATCCAGACAATCCAGAAGTCACTGTATTAACCCAGGAAGCAATCATCACGGTGAAGGGTGTCAGTCTGAGCAGCTACCTTGAAGGACTGATGGCTTTAACTATGTCAGCCAATGCAAGAAAGGTAGACTGCTGTCTGTATTGCCTCCTTTCATGCTTATCAACTGGCATTTACTGA

Function

symbol description
prelid3a Predicted to enable phosphatidic acid transfer activity. Predicted to be involved in phospholipid transport. Predicted to be active in mitochondrial intermembrane space. Orthologous to human PRELID3A (PRELI domain containing 3A).

GO:

id name namespace
GO:0015914 phospholipid transport biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:1990050 phosphatidic acid transfer activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-130530-654 Predicted to enable phosphatidic acid transfer activity. Predicted to be involved in phospholipid transport. Predicted to be active in mitochondrial intermembrane space. Orthologous to human PRELID3A (PRELI domain containing 3A).

Ensembl:

ensembl_id ENSDARG00000055288

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020954 False 1284 mRNA 0.40 7 25275767 25285582
TCONS_00020955 False 542 mRNA 0.46 6 25278258 25285469
TCONS_00020956 True 519 mRNA 0.46 6 25280343 25285469

Neighbor

gene id symbol gene type direction distance location
XLOC_010708 NA coding downstream 34699 25238250 ~ 25241068 (-)
XLOC_010707 LRATD2 coding downstream 42252 25231963 ~ 25233515 (-)
XLOC_010706 BX571853.3 coding downstream 69719 25174628 ~ 25206048 (-)
XLOC_010705 prss1 coding downstream 190440 25080764 ~ 25085327 (-)
XLOC_010704 NA coding downstream 202875 25068504 ~ 25072892 (-)
XLOC_010710 BX571853.2 coding upstream 42949 25328531 ~ 25328647 (-)
XLOC_010711 BX571853.1 coding upstream 54354 25339936 ~ 25342126 (-)
XLOC_010712 rbfa coding upstream 78731 25364313 ~ 25368048 (-)
XLOC_010713 adnp2a coding upstream 86071 25371653 ~ 25380969 (-)
XLOC_010714 pard6ga coding upstream 102921 25388503 ~ 25393699 (-)
XLOC_010626 CR392024.2 misc downstream 4380592 20895112 ~ 20895175 (-)
XLOC_010703 BX539313.3 non-coding downstream 263369 24999679 ~ 25012398 (-)
XLOC_010690 CR854851.1 non-coding downstream 881304 24394346 ~ 24394463 (-)
XLOC_010686 NA non-coding downstream 1280438 23984776 ~ 23995329 (-)
XLOC_010732 NA non-coding upstream 1086115 26371697 ~ 26379456 (-)
XLOC_010734 CR391910.2 non-coding upstream 1217511 26503093 ~ 26507404 (-)
XLOC_010737 CR391910.3 non-coding upstream 1315418 26601000 ~ 26601433 (-)

Expression


Co-expression Network