XLOC_010712 (rbfa)


Basic Information

Item Value
gene id XLOC_010712
gene name rbfa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 25364313 ~ 25368048 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00020959
TTTCAGGCAAGTTTAGTCGATTCCGAGTGTCTATATCGTGAGTAGGAGGTGATCATGTTGGCTGTCAGGAGAGTTTTTTGCGTTAAAGAAAAGACATTTATTCGACATGCCACTGCAACAACAAGCGTTTTGTGTACAGTGACAGCGCGACCCGACAGACTAGCTAACCAGCGCGTGTCCTGGTCTGTTATACATAAAGAAAGAAGCCTTCACACCTCAGCCTGTCTTTCTGGAGCTAATAAACTGATGAAGATGCTGGCTAAAAAGAAGAAGAAACATTGGTACGATACTCCTCTACGTACCACAGATATCAGTCAGTATGGCTTTCTGAAGCCCCCAAAACGAAATGTGGAGGACAGTGTTCGTGTGAGGACTCTAAACATCATCATCTACAAGACAGTGACAGACCTGCTGAGCTCCTATGAGCTCAACTCCGAGATCAGTGCCTACAATGTGGAAATTTCCAAAgtTTCACTAACAAAAGATTTCTCTGCTTGTCGAATATACTGGAAGACAAGTTTATCAGCTGAGCAAGACCGTCAGACTCAGCAGGCCTTAGACAAATGTGCTCCTCGCATACGGCATCTTCTTGTCTCTCACCAACTCATTGGCAACGTTCCTCCTGTGGTGTTTGTCAGAGATAAACAATATGCTGTTGTGACTGAGATTGAAAACCTCCTCAAGCAAGCAGATTTTGGTCCAACTGAAGACAACATAAATCATTCAGCCATCAGTGATAAACAGGCCAAATTGCAGCCTCTGGATTCCAGTGATAAGAAACGACCCGTTTTGTTCGGTGTTGATCACGACGCTCTGCACAAACAGATTGAAGCCTATAAACGAGAGAAAGGAGCGAGAGACTCGATCATAGAAAATCCTGCTGCAGGAAGACTAACACAAGAGCAGCTGGACACACTAGCGAACATTAGAAAGCAGAAACTCATAGAGAAAAAGAAACAGAAGTCCAAGCGCATGAAGGATGATGATATCAGCCCTAAAGATTTCCTGTTGTCCAGAAGCCTTGAGAAAGAAGAGCTAGACAATGACGAGGACAGACTGGAGGAAAGCCAAATCGCAGAGCTATTGGAGGAGGATGACCGGAGACGGTGAAATTAGTGAGGAAAAAAATCATTGGAACTAATAATTTAAAGTGTGATCTGTATAATAAAGTTTGAACGCATATATGTGCATATGGTGA

Function

symbol description
rbfa Predicted to act upstream of or within rRNA processing. Orthologous to human RBFA (ribosome binding factor A).

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005575 cellular_component cellular_component

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-070410-83 Predicted to act upstream of or within rRNA processing. Orthologous to human RBFA (ribosome binding factor A).

Ensembl:

ensembl_id ENSDARG00000073705

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00020959 True 1198 mRNA 0.43 7 25364313 25368048

Neighbor

gene id symbol gene type direction distance location
XLOC_010711 BX571853.1 coding downstream 22187 25339936 ~ 25342126 (-)
XLOC_010710 BX571853.2 coding downstream 35666 25328531 ~ 25328647 (-)
XLOC_010709 prelid3a coding downstream 78731 25275767 ~ 25285582 (-)
XLOC_010708 NA coding downstream 123245 25238250 ~ 25241068 (-)
XLOC_010707 LRATD2 coding downstream 130798 25231963 ~ 25233515 (-)
XLOC_010713 adnp2a coding upstream 3605 25371653 ~ 25380969 (-)
XLOC_010714 pard6ga coding upstream 20455 25388503 ~ 25393699 (-)
XLOC_010715 zgc:136493 coding upstream 26715 25394763 ~ 25400257 (-)
XLOC_010716 dtnbp1a coding upstream 136061 25504109 ~ 25535430 (-)
XLOC_010717 atxn1b coding upstream 187261 25555309 ~ 25568512 (-)
XLOC_010626 CR392024.2 misc downstream 4469138 20895112 ~ 20895175 (-)
XLOC_010704 NA non-coding downstream 291421 25068504 ~ 25072892 (-)
XLOC_010703 BX539313.3 non-coding downstream 351915 24999679 ~ 25012398 (-)
XLOC_010732 NA non-coding upstream 1003649 26371697 ~ 26379456 (-)
XLOC_010734 CR391910.2 non-coding upstream 1135045 26503093 ~ 26507404 (-)
XLOC_010737 CR391910.3 non-coding upstream 1232952 26601000 ~ 26601433 (-)
XLOC_010738 BX537166.2 non-coding upstream 1251565 26619613 ~ 26642034 (-)
XLOC_010740 NA non-coding upstream 1351832 26719880 ~ 26731928 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000027_05848565_05850396 NA coding CI01000027 null 5848507 ~ 5850396 (-)