CI01000080_00330537_00333221


Basic Information

Item Value
gene id CI01000080_00330537_00333221
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 330242 ~ 333221 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000080_00330537_00333221.mRNA
ATGTCCAAACACAAGACGAAAAAGCTCATCATTGAAGATGATGAGCCAAAGCAAGATGAGCTGAATCCATTTTCTTTCAAAGAGTTTATCAGAAACAAGAACCAGCAGCCCTGTACTACAGAAGCCACAGAGGTATATGATGGTGCATGCCACGTCGAGCGGGACTATAACACCTCCATAGATTTGGCTACCAAGGGGCCTTTCTTCACAGACCCCTCTGTGCTCTGTCAGCCTTCTGAAAGCGAACCTGAGGAGACATGGATTGAAAGCTGCCACCCATCAGCCCTTGAAGGTTCTCATGACTTCCAACTAAGTGGGACTTTAGACCTCAGCACTTACTCTGAGCAGTCATCTCTGTGCAGTGATGAGAGGGAAGCAAATGTGACTGAATGGGAGCTGGATCAGTCCGACTTCCTGCCAAAGAAGCACTTAGGAAGAAGAAGCACAGGAAGTTATGAGGGTGATGAAGAGACTTCGGTGATTGATATTTCTTTCCATCTTAAGAGGAACAATGCTGAAAATGGCACAAAGAATGCTCAACAGCTCAGAGAAGAGAATTCTCTACTTAGAAAGCAAATCAAAGAACTCCTTAGAAGGTCAGAAACTGACTCCAAAAGGATCGAACAACTCACAGATGAGCTGCACAACAAGAAGTTACAGGAGGAGAGAGAGGCTAAGGCTTTGGAGACGATGGTGCAGTCAGTAGAACAAAACCTTCAGTTAATGACGGGCCAGCTTGAAGGATATAAAAGTGAAAATGAGAGGCTTAGATATGGAGAAACTACAGCCTTAACCACAATGAGACACAATGCACAAGTGGCCTCTGAGTACCTTAACAAAGCAGCTCAAGATGCAGAGACTTCTATCAAGTATGATTAACAATGACCATTACATGTTTTGATTATTTCTCTTTTAAAAAAATATCAGAAATGTACAGTAAATGAATCAAATCATTGCACTGAATGTGTTGTTTATGTTTACAGGCAGTTGCTGACAGGAAGAGAGACACTCTATTTTGTATCCCAGTTATTGACCTCCATTGACAAGATCACAGAGATTCATGATTAAGCGTTTCCCTTTCACAGCCAAACATCATGTTCTGTACACTATGGGCCCACTATATTTAGACTGTGGTATTTCATTGTTTATTATTTCATTCATAAATTTCATTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000080_00330537_00333221.mRNA True 1174 mRNA 0.41 6 330242 333221

Neighbor

gene id symbol gene type direction distance location
CI01000080_00328119_00328700 NA coding downstream 1542 328119 ~ 328700 (-)
CI01000080_00319743_00328159 NA coding downstream 2083 319743 ~ 328159 (-)
CI01000080_00318151_00318865 NA coding downstream 11377 317884 ~ 318865 (-)
CI01000080_00309567_00317169 CARD9 coding downstream 12573 308046 ~ 317669 (-)
CI01000080_00292016_00307681 CCDC180 coding downstream 22561 290561 ~ 307681 (-)
CI01000080_00521848_00524367 OTP, OTPA, OTPB coding upstream 187860 521081 ~ 524390 (-)
CI01000080_00597523_00605227 LHFPL2B coding upstream 264094 597315 ~ 606452 (-)
CI01000080_00614889_00638900 HOMER1, HOMER1B coding upstream 280641 613862 ~ 640684 (-)
CI01000080_00670914_00678760 MTX3 coding upstream 337528 670749 ~ 678760 (-)
CI01000080_00699809_00719764 SERINC5 coding upstream 366404 699625 ~ 719764 (-)
G290258 NA non-coding downstream 64794 264677 ~ 265448 (-)
G290252 NA non-coding downstream 78309 251668 ~ 251933 (-)
G290203 NA non-coding downstream 130623 198709 ~ 199619 (-)
G290205 NA non-coding downstream 164768 164571 ~ 165474 (-)
G290360 NA non-coding upstream 167168 500389 ~ 501638 (-)
G290361 NA non-coding upstream 168583 501804 ~ 502067 (-)
G290362 NA non-coding upstream 169105 502326 ~ 503408 (-)
G290528 NA non-coding upstream 235332 568553 ~ 568756 (-)
G290529 NA non-coding upstream 248238 581459 ~ 581692 (-)
G290261 NA other downstream 725 327689 ~ 329517 (-)
G290197 NA other downstream 50395 272397 ~ 279847 (-)
G290314 NA other upstream 74664 407885 ~ 408144 (-)
G292089 NA other upstream 1302541 1635762 ~ 1693395 (-)
G292349 NA other upstream 2184857 2518078 ~ 2525409 (-)
G292387 NA other upstream 2400366 2733587 ~ 2743246 (-)
CI01000080_03207204_03212602 NA other upstream 2875764 3207204 ~ 3212913 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location