CI01000080_01268777_01277656


Basic Information

Item Value
gene id CI01000080_01268777_01277656
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 1268203 ~ 1277997 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000080_01268777_01277656.mRNA
ACCAACACAAACTGTATTGCAGTTCTCAAGACGTGCTCGCAAAAAAAAAAAAAAAAAAAAAAAAAGCTTTTCTTTTTAGGCTGCATCACTTTGCATTTGGACACATTAACCGGACAAGCGAAGCTTCTCGAACACAACTCTTTTCCCACACCAAAGCTTTGAGAATTTGATTTCACACAGTGGACACCACCCCCTTGTGGTTAATGTGTTACTGTCACAACAATTTTTCCAGTTCCTTGTTTTCAAATACAGAAGTTGGGCAGTGTGTAGGAGTCTTTGGTTTCGCTTATTCAAATGTCACCATCACAAGGACAGTTAGTGTTCAGCATTCACCATTCACCATGAAGCTTCAGATTTGTCTATTTCTCGGCATGACATTTTTTTGCGTATCGACAGCTGATTTCTCTCCCCCGGTGGTAAACATCAGTCTGGACGTGCCTGCCTTTCAGCGATGGGCTCCTCTGAAGAACCTCTATGACATTAATTTCTTGAGAAAAGCTGCATCTGAAGTGATCGACTCGACTGTTCCCAAATGGGTTCATGTTGCCGTTAAACCCATAGTGGAGGCTTTGGAGAAATACATCCCACAGCCGTATGCTGGAGAAATACAGGGCATGGCATCATTCTATGGGACTGACATTTCAGATATCGTGCTGCTGAACTTTGCCTATGAAGTATCTGCGTTTTGCACCAGTATTGTAACTCAGGATACAAAGGGCAATATATTCCATGGCAGAAACCTGGACTATCCTCACGATGTGCTCAGAAATCTAACTCTAGATGTACATTTCATGAAAAATGGAAAGGTGGCGTACAGAGGAACAACTTTTGCTGGTTATGTTGGGCTGTGGACAGGACAGAGCCCCAACAAGTTTACAGTGTCTGGCAACGAACGCGATAAGGGATATTGGTGGGAGAACGTAATTTCAGCCGTTTTATTAAAAAGTTCTCCAGTTAGCTGGCTAATTCGAGAGACTCTTGAAGCAGCTGTGGATTTCCAGGATGCAGTAGTGAGGCTGGCCAAAGTGCCGATTATCACAGATGTTTATTACATTTTGGGTGGTGTTCGTGCTGGTGAGGGTGTGGTCATCACCAGAGACAGGGCAGGATCAGCTGACATCTGGCCTCTGGATCCACTTAATGGACAGATCACAGTTTATACAACCGTCATGAGTGCCGCCATACCTGAGAAGTACAGAACATTTGTCAGAGATGACATTGAAGGTCTCAGGGGATATGGGGAAGCCTGTGACTATGCTTTCTTTGTGTCAGTGCAAGTTGATTTATTTACGTTTCTACTATTCGCATTGACTAACTCAAGCAAGCACCAATGGAGTACACCAGACGGATACATTCCTTTGGGTGACATGTTGTGGAAATAAAGCTTCTGGGATTTAGAAGAGAAACCACCAGGTGAGTTTTACCCATGCTGGGGTTGTGTACCTTTGATTTGTCGTCTATTGCTGTAACCTTTTATGGCTTAATTGTTTACTGCCACCGTTTACAGTGCCTTTCATATTAACATCCAATTCAAAGAAATACACAGAAAAGGTACTAAAAGCTACAACAAATTTAATGGTGATCTATAATGTCAAAATCTTAATCTTTTATGGATTTAGTTTTAATTAATTTTGTTTGAATTCCTTTTCATTTTGATTAAGTTTTATGAAATAAACAGCTAGTAAACATACTTCATCAGTAGACAAAACTGAAACATGAAAGTATTACGCGACCATTTAAGACATTTTTCCTTATATAGAAACTTTTGGGCATAAAGGGTTCTTTAAAATTGAGTAAAAACCTATACCTTTTTTTCTAAGCTAGCTTCAAAACTAGCATGTCTGTTTTTTACACTAAATTATTGTGATTTCTGTTGAGCTAATGAATAACCTTCCTTACAAACAAGTCTATAAATCCATAGTCCATAATCCCTAGTTCAGGGTTTCCTTAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000080_01268777_01277656.mRNA True 1956 mRNA 0.40 8 1268203 1277997

Neighbor

gene id symbol gene type direction distance location
CI01000080_01256819_01266378 PPEF2, PPEF2A coding downstream 1825 1256584 ~ 1266378 (-)
CI01000080_01207732_01214256 NA coding downstream 53791 1207565 ~ 1214412 (-)
CI01000080_01179133_01187378 NA coding downstream 80825 1178202 ~ 1187378 (-)
CI01000080_01172564_01172904 NA coding downstream 95299 1171539 ~ 1172904 (-)
CI01000080_01048748_01071339 MAMDC2A, MAMDC2 coding downstream 196864 1048748 ~ 1071339 (-)
CI01000080_01298042_01314713 NA coding upstream 19576 1297573 ~ 1314973 (-)
CI01000080_01322747_01325626 EMB coding upstream 44587 1322584 ~ 1325626 (-)
CI01000080_01333090_01343070 MALT1 coding upstream 55093 1333090 ~ 1343070 (-)
CI01000080_01369811_01377361 NA coding upstream 91625 1369622 ~ 1377361 (-)
CI01000080_01378001_01380645 NA coding upstream 100004 1378001 ~ 1380645 (-)
G291002 NA non-coding downstream 23524 1244457 ~ 1244679 (-)
G291000 NA non-coding downstream 26300 1241661 ~ 1241903 (-)
G290908 NA non-coding downstream 27616 1229213 ~ 1240587 (-)
G290936 NA non-coding downstream 100972 1166856 ~ 1167231 (-)
G290951 NA non-coding downstream 165256 1102657 ~ 1102947 (-)
G291013 NA non-coding upstream 14487 1292484 ~ 1292796 (-)
G291014 NA non-coding upstream 14933 1292930 ~ 1293246 (-)
G290914 NA non-coding upstream 37596 1315593 ~ 1321540 (-)
G291017 NA non-coding upstream 50166 1328163 ~ 1328401 (-)
G291025 NA non-coding upstream 158232 1436229 ~ 1436730 (-)
G290314 NA other downstream 860059 407885 ~ 408144 (-)
G290261 NA other downstream 938686 327689 ~ 329517 (-)
G290197 NA other downstream 988356 272397 ~ 279847 (-)
G292089 NA other upstream 357765 1635762 ~ 1693395 (-)
G292349 NA other upstream 1240081 2518078 ~ 2525409 (-)
G292387 NA other upstream 1455590 2733587 ~ 2743246 (-)
CI01000080_03207204_03212602 NA other upstream 1930988 3207204 ~ 3212913 (-)
G292714 NA other upstream 2437484 3715481 ~ 3728010 (-)

Expression


Co-expression Network