CI01000080_01542470_01546061 (TMEM8C)


Basic Information

Item Value
gene id CI01000080_01542470_01546061
gene name TMEM8C
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 1542239 ~ 1546783 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000080_01542470_01546061.mRNA
AGTACAAAGTGAGAATTTGTTCTTGGGTTCCCTTCATTCATTTAATAGGTACATCTGGTATGGGTCTACGCAAGACTCACTGGTCTCAAACACAAACATCTTAAGCCTACACCTTACCTTAACCATTCACATTTTTCTACCCTCAGAACCACATTCACGTCAAACACAGATTTGCAATGACGCATACAGGTGCTTTCGTGAGGCCAATGTCAATAACCCAAAAGAGACAGCTGTTTCTATAGCCACTGCTGAGGATCGATTCACCCATGAGAAGCTTAATGTCTGAGACTCAACACATTGCCATCCAGACTGACCAGTATAAGAAAAATACATTTCAAAGAATTCTCTGTACGCGCTAGAAATTTTTTTATGCGTGGAAACACCTTGACTCAGCATTGACTCTGTGATTGCGGTTCCATAGATTGTGAAGTTTACCATAAATGGCTTTACTTTTGTCCCGCTGCTGTTGTTCTACAATCCCAAACATGTGTGACAGAAGCGTGCCATGTGATTGCAGGCCTCTCCCAGTCTTCACGCAGACAGCTGCTGTTCTGATGACAGTGCGCATACAGACCTCTCTGAGCCATTTAAACTTTAAAGATCCTCCAGGAGGTTGTGAGTGAGTGAGAATCACTTCTTCAATCGCTTCTCCAAAAGATCTGGTGGTTTGAAACATATAGACAAGTTTTCCACAAATCCTGAGGCCTTTTATTTGGGTCACAATGGGAGCTTTTATCGCCAAGATGTTGCTGCCCACCATCAGCAGTTTGGTGTTCCTGCCTGCAGCCAGTGTGGCCGCCAAGAGGGGCTTCCACATGGAGGCCATGGTCTATTTCTTCACAATGTTCTTCACAGCGATTTACCATGCATGTGATGGTCCAGGCTTGTCCATTCTCTGTTTCATGAAGTATGAGATTCTGGAGTACTTCAGCGTGTACGGCACAGCTATCTCCATGTGGGTCACGCTACTAGCACTGGGAGATTTCGATGAACCCAAGCGCTCTTCGCTGACCATGTTTGGTGTGTTGACCGCGGCTGTGAGGATTTACCAGGACCGCTTGGGCTACGGCATCTACTCCGGCCCAATTGGAACAGCTGTCTTCATGATAACAGTCAAATGGTTACAAAAAATGAAGGAAAAGAAAGGCCTTTATCCAGACAAAAGTGTTTACACTCAACAAGTGGGGCCAGGGTTCTGCTTCGGTGCTCTTGCTTTGATGCTTCGCTTCTATTTTGAGGAGTGGGACTACGCTTATGTCCACAGTTTCTACCATGTGTCACTGGCTGTGTCCTTCATTCTGCTGCTGCCCAAGAAGAACCGCTATGCCGGGACAGGACGCAATGCAGCCAAACTTAACTGCTACACCCTCTGCTGCTACATCACAACCTCAGATGAAGGAAAAAGCACGGACTATCTGGACAACTTCTCAAAAACCCTGGATGCGGACCTGTGGTCCTGGCCTGCCGTTACACAAATCCCAGCCACGCACCATGTAATGCAAGAAACTGTGTCTGTTAACAGCACCCTGAAAGTGAGGACAGTTATACGACCTCCCAGCAGGCCAAGTATGCCTTGGACAACTTATTCATAGGGATAGCATGATGCCCTGATAGACAAAATCACTGAAAAGATACTGAAACGTATGTTTAAAGACTCAAGGCAAGATAAAGACTGTGACAGTGAAGACTATCCCTATGACAAGAAGAGTTCATCTGAAAAGAAAAGACCAAGACTAAAACTGGATTTGACTCCTCAAATCCAGCTGGAAAGTTTATGAGTCACAAAAAAACAGCAGACACATAATCTATCCAAAAAGAATAAA

Function

symbol description
tmem8c protein myomaker

GO:

id name namespace
GO:0007517 muscle organ development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000080_01542470_01546061.mRNA True 1823 mRNA 0.45 6 1542239 1546783

Neighbor

gene id symbol gene type direction distance location
CI01000080_01514171_01520784 SLC2A8 coding downstream 21401 1514136 ~ 1520838 (-)
CI01000080_01500308_01505160 NA coding downstream 36825 1499877 ~ 1505414 (-)
CI01000080_01442459_01464557 JAK2B coding downstream 75233 1441985 ~ 1467006 (-)
CI01000080_01423592_01425914 NA coding downstream 116325 1422979 ~ 1425914 (-)
CI01000080_01396194_01413199 GLDC coding downstream 128960 1396156 ~ 1413279 (-)
CI01000080_01584991_01585618 NA coding upstream 37076 1583859 ~ 1585709 (-)
CI01000080_01726615_01730435 NA coding upstream 179206 1725989 ~ 1730435 (-)
CI01000080_01732531_01763618 KCNT1 coding upstream 185607 1732390 ~ 1763618 (-)
CI01000080_01954854_01959161 CFAP157 coding upstream 407908 1954691 ~ 1959324 (-)
CI01000080_01980939_01981859 NA coding upstream 433521 1979746 ~ 1982199 (-)
G292050 NA non-coding downstream 29634 1512333 ~ 1512605 (-)
G292044 NA non-coding downstream 47300 1494581 ~ 1494939 (-)
G292043 NA non-coding downstream 49436 1490295 ~ 1492803 (-)
G292040 NA non-coding downstream 55102 1486802 ~ 1487137 (-)
G291028 NA non-coding downstream 60756 1481277 ~ 1481483 (-)
G292085 NA non-coding upstream 85281 1632064 ~ 1632272 (-)
G292114 NA non-coding upstream 100782 1647565 ~ 1648244 (-)
G292089 NA non-coding upstream 122256 1635762 ~ 1693395 (-)
G292123 NA non-coding upstream 144597 1691380 ~ 1691674 (-)
G292103 NA non-coding upstream 175515 1722298 ~ 1723134 (-)
G290314 NA other downstream 1134095 407885 ~ 408144 (-)
G290261 NA other downstream 1212722 327689 ~ 329517 (-)
G290197 NA other downstream 1262392 272397 ~ 279847 (-)
G292349 NA other upstream 971295 2518078 ~ 2525409 (-)
G292387 NA other upstream 1186804 2733587 ~ 2743246 (-)
CI01000080_03207204_03212602 NA other upstream 1662202 3207204 ~ 3212913 (-)
G292714 NA other upstream 2168698 3715481 ~ 3728010 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030618 mymk coding NC_007116.7 CM002889.2 65946222 ~ 65954173 (+)