CI01000080_02015292_02021186 (PMPCA)


Basic Information

Item Value
gene id CI01000080_02015292_02021186
gene name PMPCA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 2014384 ~ 2021587 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000080_02015292_02021186.mRNA
AACCCCTAAGTCTAACTGGACTTATGATTTAAACCTTTATAATTTTTGAGATATAGCTCTTCTGTGAAAACCAGTCCCAGTCTTTTCTACATGTTAAGTATGCAAGCTTAGTACAGTAAGTATGTAGGCATCATAATATAAATTAGTTGTTACTGTGCAAATAGGCCTACCACGTTGTTGTATATTTCCCATCACAGTACCAATGTAAATATATATTTTGTTTCTAAATCTGTCTTCAATATTTACATAATATGCCGTCTATGTGTGGGCAGTCTTTAGATTTTAACATTTTGTTTGTTTGTTTCTAGGCAACATCGTAACAACACTACTAATAAGGAAGTAGAGTAGGAAGTGTTTAATAATCATTTCCGGGAAAGGTTCATGGTCAAATAGAATCCAACATGGCTGCTCACATGTCCAGATTGCGGGGCTGGAGCCGAGCTCAAAGGTATGGCATCGCAGTATGTAGACAGTACAGTAGTGGCAGCGCGTATCCCAGTGTGTCCCTGTCCACGCCGCTGCCCGGGATTCCCAAACCTGTCTTTGCTTCTGTGGACGGCCATGAGAAATACGAGACTAAAATTACCACCTTAGAAAACGGACTCAAAGTTGCGTCTCAGAACAAATTTGGTCAATTCTGTACAGTTGGAACCCAGTTTGGAAGTAAAGATGAAATTCTCCTAACACTTGAGAAACATGGAGGCATATGTGACTGCCAAACATCCAGGGACACAACAATGTATGCAGTTTCAGCTGAAGTGAAGGGTCTGGAAACTGTAGTGAACCTCCTGTCAGATGCAGTTCTGCAGCCCCGTTTATTAGATGAGGAGATTGAGATGACCAGAATGGCTGTTCGGTTTGAGTTGGAGGATCTGAACATGAGACCTGACCCAGAGCCTTTACTAACAGAAATGATTCATGCTGCAGCATACAGGGGCAACACCGTGGGCCTGCCTCGCTTCTGCCCTGCCAACAATGTTGAGAAGATCGACAGGAGGCTGCTTCATAAGTACCTACAGAGCTATTACTGCCCGGAGCGCATGGTGCTGGCCGGAGTTGGGATTGAACATGAGCAGCTTGTTCAGTGTGCCAGGAAGTATCTCCTAAATGTTAAACCTGTATGGGGCGTGAGCACACCTGCCAACGTCGACCTGTCTGTAGCACAATACACAGGCGGCATTGTTAAGATGGAGAAGGACATGTCTGATGAGGATGACTTCATCCCCTTTGCGGTCCTCAATATGATGATGGGAGGCGGAGGGTCTTTCTCTGCTGGAGGGCCAGGAAAAGGCATGTTCACCCGTCTCTACCTTAATGTGCTCAACAGGCATCACTGGATGTACAATGCTACTTCGTACCACCACAGCTATGAAGATAGTGGTCTGCTGTGCATCCATGCAAGTGCAGATCCTAGACAGATGGAGCTCGAGAGAGCCAAGACACAACTGAAATCCATGCTCATGATGAACCTGGAGTCTCGACCCGTCATCTTTGAAGATGTAGGTCGACAAGTACTTGCGACAGGCAAGAGGAAGCTGCCTCATGAGCTGTGTGACCTCATCAGTAATGTTACAGCCAGTGATATCAAGAGAGTTACAACGAAAATGCTGCGTAGCAAGCCTGCAGTAGCTGCGCTGGGAGATCTGACAGAGCTGCCCTCATATGAGGACATTCAGGCCGCTCTCTCTAGTAAAGATGGACGTCTGCCTCGCATATACCGCCTGTTCCGATAGGGGGCCAACGGCTGACACTATCTAGAGACAAATAGGAGAACTGACCCAACAAATATTCTTCTTCACTGGAATTTAAGTGCAATCCTTAGCAGGACTGTCTTTGCATTTCATCTGTATAGTGTTTAAAAGGTAACTTAGAGATAGTTACGCAGAAAATGGAAATTCTGTCATTTACTCACCATCATGTCATTCCAAAACTGTAGCCTTTCTTCTGCGGAACATAAAAGATAAATGTCTTAGTTTGCTGTCCATTGAATGTTTGGTTCCCAGCGTTTTTCAAAATATCTTTTCTGTTACGCAGAAGAAAGTGTCAAACAGATTTTGAATGACATAAGTAAACTACAGCATTTTCATTTTTGGGTGGAGAATTCCTTTAAATTTTAAATGCTGATGTGATGGCCGAGTACAGTTTCACATATCCACGTTTTTTGGCATGATTTTGTTGAACCCACCATGTTTAAAGTGAATTAATGTGCTCATTTTTCACATTTCCATCTTATTTGGCTTGACAAGTGGAGTTTCCCATGTCATTCAAGTCTGCGTTGCTGTTCATAGGCTGTGCTCTTCTGTGTAAAACTGGGCAAACCAGAAAGATATTTCTCATGTGACATAGCATTTTCCCACAAAGCTCTATAAAACACTCTTTTAGTTAAAGTGTTAGATATTAAAATATCCAATCAAAATGCAGTGAAAACAGAACCATCAACCAATGATTTTAAGTGTATATAATCCCTACTTCTGTTGCTAAATCACTGTTCACAATTCCTCCCCAGAATTACTGTCAGTATCCCTTTATGTTGGTTTACCCTAAAATAACATATTTATTCCCTTGCACTTCCATTTACGGTTAGATTTTTACATTAAGATGATGGGAATAGGTAAATCTGTTGTCCCTTGGAAAAAATAAA

Function

symbol description
pmpca Predicted to enable metal ion binding activity. Predicted to be involved in protein processing involved in protein targeting to mitochondrion. Predicted to act upstream of or within proteolysis. Predicted to be located in mitochondrial inner membrane and mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in several structures, including alar plate midbrain region; anterior neural keel; head; immature eye; and optic tectum. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 2. Orthologous to human PMPCA (peptidase, mitochondrial processing subunit alpha).

GO:

id name namespace
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01412 PMPCA, MAS2; mitochondrial-processing peptidase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000080_02015292_02021186.mRNA True 2641 mRNA 0.42 11 2014384 2021587

Neighbor

gene id symbol gene type direction distance location
CI01000080_01993914_01996596 NA coding downstream 17762 1993448 ~ 1996622 (-)
CI01000080_01987220_01990307 PTRH1 coding downstream 23687 1986498 ~ 1990697 (-)
CI01000080_01980939_01981859 NA coding downstream 32185 1979746 ~ 1982199 (-)
CI01000080_01954854_01959161 CFAP157 coding downstream 55060 1954691 ~ 1959324 (-)
CI01000080_01732531_01763618 KCNT1 coding downstream 250766 1732390 ~ 1763618 (-)
CI01000080_02057026_02085109 PTGS1 coding upstream 33808 2055395 ~ 2085109 (-)
CI01000080_02113135_02116388 NA coding upstream 91507 2113094 ~ 2116388 (-)
CI01000080_02117016_02119929 PPIL3 coding upstream 95199 2116786 ~ 2119929 (-)
CI01000080_02122386_02126617 LRRC8AA, LRRC8AB, LRRC8A coding upstream 100721 2122308 ~ 2127055 (-)
CI01000080_02173438_02187618 OLFM1B, OLFM1A, OLFM1 coding upstream 151766 2173353 ~ 2188990 (-)
G292197 NA non-coding downstream 21390 1992714 ~ 1992994 (-)
G292176 NA non-coding downstream 47818 1962538 ~ 1966566 (-)
G292096 NA non-coding downstream 201412 1812411 ~ 1812972 (-)
G292102 NA non-coding downstream 289359 1724695 ~ 1725025 (-)
G292214 NA non-coding upstream 68418 2090005 ~ 2090238 (-)
G292242 NA non-coding upstream 189256 2210843 ~ 2211065 (-)
G292262 NA non-coding upstream 242027 2263614 ~ 2266106 (-)
G292339 NA non-coding upstream 469527 2491114 ~ 2517180 (-)
G292387 NA non-coding upstream 712000 2733587 ~ 2743246 (-)
G292089 NA other downstream 342464 1635762 ~ 1693395 (-)
G290314 NA other downstream 1606240 407885 ~ 408144 (-)
G290261 NA other downstream 1684867 327689 ~ 329517 (-)
G290197 NA other downstream 1734537 272397 ~ 279847 (-)
G292349 NA other upstream 496491 2518078 ~ 2525409 (-)
CI01000080_03207204_03212602 NA other upstream 1187398 3207204 ~ 3212913 (-)
G292714 NA other upstream 1693894 3715481 ~ 3728010 (-)

Expression


Co-expression Network