CI01000080_03309401_03310494 (HTR1FA)


Basic Information

Item Value
gene id CI01000080_03309401_03310494
gene name HTR1FA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3309337 ~ 3310494 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000080_03309401_03310494.mRNA
GCATGGATACAAACCACACATATGGATCTACCCCTGCAGATGGGAACAGCAAAAACACATGGGACATGATTCTTCTCTCCCTCACGCTTTCGTTTCTGGCCATACTGACTACGGCGATGAACTGCTTGGTCATCACAGCCATCATCGTCACACGCAAGCTGCACCACCCCGCAAACTATCTCATCTGCTCTTTAGCTGTGACAGACCTTTTGGTGGCCATTTTAGTCATGCCCTTTAGCATTGTCTACATAGTAAAGGAGACGTGGGAAATCGGTCAAGTCATGTGCAACATCTGGTTAAGCGTGGACATAACCTGCTGCACATGCTCCATTCTGCACCTGGCAGCCATCGCTGTGGACCGTTACCGCTCCATCACAGACGCCGTGGAGTACTCGAGAAAGAGGACATCTCTACGGGCCGCCATCATGATCAGCATAGTGTGGCTCCTCGCTATAGTCGTCTCTCTGCCGCCAATGCTGTTGAGACAACAAGACGAGGAAAATCACTGCATCATTAAGCACGACATCGTCTTTACGATTTACTCCACATTTGGGGCTTTTTACATCCCGCTAACACTCATTCTCATTCTCTACTACAAGATCTACCAAGCAGCAAAGACTCTTTACCAAAGGAGAGAGGCCAGTTGCCTCAAGCCAGAGATGAACGGACAAACGCTTCCCAAGTGCAGCGACAGGGAGCCGACAACCCCGGACACCCTGAGCCCTCCAGAGAAATCAGTGTCTGAACCCTCCACCGAAGGTGACAGAGTGCGCATTGCCACAAAAAGTCCAAAGTCTCAGTCTTGCAGACAGCGGTCTGTCAGGAGGCATCGCATCTCGAGTACGCGTGAAAAGAAGGCCGCCACCACTCTCGGACTCATTCTAGGGGCTTTTGTCATCTGCTGGCTGCCGTTCTTTATCCATGAGGTGATTGTTAATGTCTGTAAGTCCTGCGCTCGCTCTCTTGAAATGACCAACTTTCTGACTTGGCTGGGATATCTGAACTCTCTCATCAACCCCCTGATTTACACCATCTTTAATGAAGATTTCAAAAGGGCTTTTCAGAAGTTAATCAAGTGCAAGAATTGTTTCTAACACCAATGAAGGATTTACGTCAAGTGAGCTCAAACTATTACACTCAAAAAATAACTGAATTAAA

Function

symbol description
htr1fa Predicted to enable G protein-coupled serotonin receptor activity; neurotransmitter receptor activity; and serotonin binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger; adenylate cyclase-inhibiting serotonin receptor signaling pathway; and chemical synaptic transmission. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in dendrite. Predicted to be integral component of plasma membrane. Orthologous to human HTR1F (5-hydroxytryptamine receptor 1F).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K04153 HTR1; 5-hydroxytryptamine receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000080_03309401_03310494.mRNA True 1158 mRNA 0.48 1 3309337 3310494

Neighbor

gene id symbol gene type direction distance location
CI01000080_03259702_03274657 SLC37A1 coding downstream 34680 3259373 ~ 3274657 (-)
CI01000080_03225699_03250598 PDE9A coding downstream 57870 3225567 ~ 3251467 (-)
CI01000080_03207204_03212602 NA coding downstream 96735 3207204 ~ 3212913 (-)
CI01000080_03199317_03204484 NA coding downstream 104853 3199200 ~ 3204484 (-)
CI01000080_03187019_03196643 PKNOX1.1 coding downstream 112694 3186491 ~ 3196643 (-)
CI01000080_03390711_03395563 NA coding upstream 80133 3390627 ~ 3395563 (-)
CI01000080_03421006_03421194 NA coding upstream 110281 3420775 ~ 3421194 (-)
CI01000080_03460127_03482686 T2FB, GTF2F2A, GTF2F2B, GTF2F2 coding upstream 149633 3460127 ~ 3482686 (-)
CI01000080_03546606_03550758 NA coding upstream 235797 3545836 ~ 3550966 (-)
CI01000080_03599356_03610857 LACC1 coding upstream 288629 3599123 ~ 3610942 (-)
G292567 NA non-coding downstream 132164 3176550 ~ 3177173 (-)
G292565 NA non-coding downstream 135079 3173977 ~ 3174258 (-)
G292563 NA non-coding downstream 136784 3172287 ~ 3172553 (-)
G292562 NA non-coding downstream 137132 3171998 ~ 3172205 (-)
G292590 NA non-coding upstream 30577 3341071 ~ 3380066 (-)
G292596 NA non-coding upstream 73219 3383713 ~ 3386192 (-)
G292606 NA non-coding upstream 81293 3391787 ~ 3423582 (-)
G292623 NA non-coding upstream 105930 3416424 ~ 3453582 (-)
G292650 NA non-coding upstream 153246 3463740 ~ 3464208 (-)
G292387 NA other downstream 566091 2733587 ~ 2743246 (-)
G292349 NA other downstream 783928 2518078 ~ 2525409 (-)
G292089 NA other downstream 1637417 1635762 ~ 1693395 (-)
G290314 NA other downstream 2901193 407885 ~ 408144 (-)
G292714 NA other upstream 404987 3715481 ~ 3728010 (-)

Expression


Co-expression Network