CI01000080_03599356_03610857 (LACC1)


Basic Information

Item Value
gene id CI01000080_03599356_03610857
gene name LACC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000080
NCBI id null
chromosome length 5175454
location 3599123 ~ 3610942 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000080_03599356_03610857.mRNA
AGGTGTGGTATGTTTGCACGTCCACATAACTTCTATCCCAGAGAGAGAGAAGCAAGCGTGTCTGCGTGTGATGATCCGAGCAGAGATGGCTGCAGTTACTCTTGTCGATCTCACACATGTCCGCTGTTCACAGTACGACATTTGTGTGAAAAAGCGCATCAGCAAGTTCTGTGCAGTCACCGGGAATGGCTCACAGGAACCGGTCTTCATCATAGCGGATCCAGAGAGCTCCGTGGGGACGGACAGATTTCCAAGAAGCTCTATTCTGGAGATGTTTATCGGGTTCAGCAATTCCCCACAGGTCCTGTGCAAAAGCTCTCTTTCAGCCTCATTATACTCATTCAAACAGGCTATAGACAAAGAGGACATTAGTAATGTGAAGATTATGACCTCGAGCCACGGGAGAGGAGTGTTTCAGGTCTACCAGGAGCTCCTCTTCACTTCTGCGTATAATTTTGAGTACACTATCATGTTTGACAATCTGTCCTCCGACTCCTGTCCCATGGGTGACTGCACAGCCATCAGCACTGAGGCAGCTGATGCTAAACACGAGCTCGGCAGGTTCCTACAGCACCTACCAGCGGTCAAAGGAGACATTACAGTTCTTAGATCTGCTTTAATTTCAGACTGCTTTGGTCATGGCTTCACCACTCGTACTGGAGGTATCTCCTACATCAGCACCCTGAGCTCACTGAACCTCTTCTGTAACCCTCGGCGCAAAGACTCCAGAGCTGTGGTGGCCGAGAACCTCCGCCGGCTCGGCCTGCGGGCTGGATTTCACCCTCATCAGTTCAACCTCATAAAGTGCAATCATGCCAGTGATGTGTGGGTGATGGGTAAACCCGCCCCCGCCAGTTACGACGGAATGGTGACCAATCAGGTTGGAGTTGTCATAGCAGCACCAGGGGCCGATTGCATGCCGCTGCTCTTCACTGACCCTGTGAAAAAGGTCACTGGAGTGGCACATGCAGGCTGGAGGGGGACCCTCATGGGAATTGCCATGGCAATAGTGAAAGCCATGGTGTCAGAGTTTGGCAGCAGGCCTGCAGACATTGTGTGTGTGATCGGGCCTTCTGTTGGGCCATGCTGCTTTACTCTGGAGCAAGATTCAGCCAGAGAGTTTCATGCCATACACCCAGACTGTGTTCGAAACATGGACTCATCGAGACCTTATGTCGACATCAGACTCGCAACCAGAATCCTGCTGGAGAGAGGTGGGATTAAGCCTGAACACATCGAGGACATCAGGATCCCAGACCAGCCTGATTCCACACTGTGCACCTCCTGCCTTCCTGAATTATTCTTCTCCCATAAAATGACTGTGGTAAACCTAACTATTGACAAAACCTCAATAACACCTCTGCTAACCTACTAAGGGTTCAAACATAGCCAACACATGCACCCCTTAATCACCATACTATACCATAGGCCTATCAGATGGTTCTGGTTCTGCTTTAGTATCCAGAATTTAGATTGGATGTAATGTGGAACTGTACTAAAATTGTTTATCCCAACAATATGGGAAATTATTAACATGACAGAGCTTGGCTAAATAGGAAAATGTAGCCTACATTTTACACAATGTAACTTTTTTTGATAAAAAATAAA

Function

symbol description
lacc1 Predicted to enable copper ion binding activity. Human ortholog(s) of this gene implicated in juvenile rheumatoid arthritis. Orthologous to human LACC1 (laccase domain containing 1).

NR:

description
laccase domain-containing protein 1-like

GO:

id name namespace
GO:0005507 copper ion binding molecular_function

KEGG:

id description
K05810 yfiH; polyphenol oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000080_03599356_03610857.mRNA True 1608 mRNA 0.48 6 3599123 3610942

Neighbor

gene id symbol gene type direction distance location
CI01000080_03546606_03550758 NA coding downstream 48157 3545836 ~ 3550966 (-)
CI01000080_03460127_03482686 T2FB, GTF2F2A, GTF2F2B, GTF2F2 coding downstream 116437 3460127 ~ 3482686 (-)
CI01000080_03421006_03421194 NA coding downstream 177929 3420775 ~ 3421194 (-)
CI01000080_03390711_03395563 NA coding downstream 203560 3390627 ~ 3395563 (-)
CI01000080_03309401_03310494 HTR1FA coding downstream 288629 3309337 ~ 3310494 (-)
CI01000080_03768413_03792359 DNAJC15 coding upstream 157241 3768183 ~ 3792412 (-)
CI01000080_03823638_03839211 NA coding upstream 212491 3823433 ~ 3839456 (-)
CI01000080_03858298_03868014 TNFSF11 coding upstream 246861 3857803 ~ 3868279 (-)
CI01000080_03871122_03871424 NA coding upstream 259875 3870817 ~ 3871885 (-)
CI01000080_03882251_03905283 AKAP11 coding upstream 271273 3882215 ~ 3905283 (-)
G292620 NA non-coding downstream 57267 3529385 ~ 3541856 (-)
G292650 NA non-coding downstream 134915 3463740 ~ 3464208 (-)
G292623 NA non-coding downstream 145541 3416424 ~ 3453582 (-)
G292606 NA non-coding downstream 175541 3391787 ~ 3423582 (-)
G292700 NA non-coding upstream 737 3611679 ~ 3611931 (-)
G292794 NA non-coding upstream 72562 3683504 ~ 3684180 (-)
G292716 NA non-coding upstream 145132 3756074 ~ 3761203 (-)
G292737 NA non-coding upstream 150577 3761519 ~ 3761891 (-)
G292726 NA non-coding upstream 151205 3762147 ~ 3763117 (-)
CI01000080_03207204_03212602 NA other downstream 380720 3207204 ~ 3212913 (-)
G292387 NA other downstream 855877 2733587 ~ 2743246 (-)
G292349 NA other downstream 1073714 2518078 ~ 2525409 (-)
G292089 NA other downstream 1927203 1635762 ~ 1693395 (-)
G290314 NA other downstream 3190979 407885 ~ 408144 (-)
G292714 NA other upstream 104539 3715481 ~ 3728010 (-)

Expression


Co-expression Network